Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3043g00014 ATGGAGATGGAATTTTTCTCCGATTATGGCGATGCCAACAGGTACAAAATTCAAGAAGTCATTGGGAAAGGCAGTTATGGTGTTGTTTGTTCAGCTATAGACACTCATACTGGCGAGAAAGTAGCAATTAAAAAGATACATGATATCTTCGAGCATGTATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCATGTTATGTTGCCACCTTCGAGGAGGGACTTTAAGGATATTTATGTCGTTTTTGAGCTAATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAATTTTTTCTGTACCAGTTGCTTCGAGCACTGAAGTATATTCACACTGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATATTAGCCAATGCAAACTGTAAACTTAAAATATGTGATTTTGGGTTAGCTAGAGTTGCTTTTAGTGACACGCCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCGGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTGATAGGAAAGCCTCTTTTTCCTGGAAAAAATGTTGTGCATCAGTTGGATCTGATGACAGATCTGCTTGGTACGCCATCGCTTGATACAATATCTCGGGTACGCAATGATAAGGCACGGAGATACCTGACTAGTATGAGGAAAAAACAGCCTATACCATTTGCACAAAAGTTTCCTAATGCAGATCCTTTAGCCCTACGACTACTTGAAAAGTTACTCGCCTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCGAAAGTTGAGAGGGAGCCATCATGCCAGCCTATTACCAAAATGGAGTTTGAATTCGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATCTTTCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATGAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAGAAGCAATTTACTCATCTTGAGGAAACTGGTGGCAAAAGTAGTCCAGTTCTGCCACCTGAAAGAAAGCATGTATCACTTCCCAGGTCAACAATTATACATTCAAATACAGTACCCACAAAAGAGCAATCAAATATTGCTTCCAGCAAAATCAGGCAAACAACTGAGGAATACAGCAATAATTCCAGGGATACAGAAAATCCTGTGCCAAGGTCCATTCAGGGTCTGCAAAAATTTTCACATGCGAAACCTGGTAAAGTTGTTGGGCCGGTTATTCCATACGAGTATGCAAGTGTTGTCAAGGGTTCATACGAGCCGAGGACATTTATGAGAGGTTCTGTTCCTCCTTCTCAACCTACTCCCCCAACGAATCATTATCAAAGATTAACCTCTGGGAAACAAGAAAGGTCAGCAACAGAAGCTGAGAAGTGTGTATCTTTACAATCAAAACTTGCACAGCAATGTTGTGTGAATGGCCAAATAGCACCAGAAATAGCAATAAATATTGATTCCAACCCCTTTTTCATGACACGAGCAGGAGTGAACAAGATAGAGCAGGATGACCGAATAGCCATTGATACAAAGTTGCTGCAAACAAAAGCTCATCAATATGGTGGGATTAGTACAACTGCTCATAGAAAGGTTGGACCAGTACAGTATGGTATTACAAGGTTGTTCTAG 1806 0.402 MEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHVSDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLALRLLEKLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFKKQFTHLEETGGKSSPVLPPERKHVSLPRSTIIHSNTVPTKEQSNIASSKIRQTTEEYSNNSRDTENPVPRSIQGLQKFSHAKPGKVVGPVIPYEYASVVKGSYEPRTFMRGSVPPSQPTPPTNHYQRLTSGKQERSATEAEKCVSLQSKLAQQCCVNGQIAPEIAINIDSNPFFMTRAGVNKIEQDDRIAIDTKLLQTKAHQYGGISTTAHRKVGPVQYGITRLF 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3043g00014 601 SMART serkin_6 15 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00014 601 SUPERFAMILY Protein kinase-like (PK-like) 11 310 IPR011009 -
Vium3043g00014 601 Pfam Protein kinase domain 15 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00014 601 CDD STKc_TDY_MAPK 14 351 - -
Vium3043g00014 601 Gene3D Transferase(Phosphotransferase) domain 1 101 329 - -
Vium3043g00014 601 ProSitePatterns Protein kinases ATP-binding region signature. 21 45 IPR017441 GO:0005524
Vium3043g00014 601 ProSitePatterns MAP kinase signature. 50 153 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium3043g00014 601 FunFam Mitogen-activated protein kinase 5 108 - -
Vium3043g00014 601 MobiDBLite consensus disorder prediction 486 510 - -
Vium3043g00014 601 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 357 - -
Vium3043g00014 601 ProSiteProfiles Protein kinase domain profile. 15 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00014 601 MobiDBLite consensus disorder prediction 407 446 - -
Vium3043g00014 601 Gene3D Phosphorylase Kinase; domain 1 30 352 - -
Vium3043g00014 601 FunFam Mitogen-activated protein kinase 101 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3043g00014 Vium-Chr3043 86097 98519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3043g00014 1 424 MAP Kinase Gene Family AT2G42880 87.972 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium3043g00014 Pkinase 5.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3043g00014 - - gmx:100811788 1042.34