Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3043g00012 ATGCAGCAAGATCACAGAAAAAAGAGTTCAATGGAGATGGAATTTTTCTCCGATTATGGCGATGCCAACAGGTACAAAATTCAAGAAGTCATTGGGAAAGGCAGTTATGGTGTTGTTTGTTCAGCTATAGACACTCATACTGGCGAGAAAGTAGCAATTAAAAAGATACATGATATCTTCGAGCATGTATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCATGTTATGTTGCCACCTTCGAGGAGGGACTTTAAGGATATTTATGTCGTTTTTGAGCTAATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAATTTTTTCTGTACCAGTTGCTTCGAGCACTGAAGTATATTCACACTGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATATTAGCCAATGCAAACTGTAAACTTAAAATATGTGATTTTGGGTTAGCTAGAGTTGCTTTTAGTGACACGCCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCGGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTGATAGGAAAGCCTCTTTTTCCTGGAAAAAATGTTGTGCATCAGTTGGATCTGATGACAGATCTGCTTGGTACGCCATCGCTTGATACAATATCTCGGGTACGCAATGATAAGGCACGGAGATACCTGACTAGTATGAGGAAAAAACAGCCTATACCATTTGCACAAAAGTTTCCTAATGCAGATCCTTTAGCCCTACGACTACTTGAAAAGTTACTCGCCTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCGAAAGTTGAGAGGGAGCCATCATGCCAGCCTATTACCAAAATGGAGTTTGAATTCGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATCTTTCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATGAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAGAAGCAATTTACTCATCTTGAGGAAACTGGTGGCAAAAGTAGTCCAGTTCTGCCACCTGAAAGAAAGCATGTATCACTTCCCAGGTCAACAATTATACATTCAAATACAGTACCCACAAAAGAGCAATCAAATATTGCTTCCAGCAAAATCAGGCAAACAACTGAGGAATACAGCAATAATTCCAGGGATACAGAAAATCCTGTGCCAAGGTCCATTCAGGGTCTGCAAAAATTTTCACATGCGAAACCTGGTAAAGTTGTTGGGCCGGTTATTCCATACGAGTATGCAAGTGTTGTCAAGGGTTCATACGAGCCGAGGACATTTATGAGAGGTTCTGTTCCTCCTTCTCAACCTACTCCCCCAACGAATCATTATCAAAGATTAACCTCTGGGAAACAAGAAAGGTCAGCAACAGAAGCTGAGAAGTGTGTATCTTTACAATCAAAACTTGCACAGCAATGTTGTGTGAATGGCCAAATAGCACCAGAAATAGCAATAAATATTGATTCCAACCCCTTTTTCATGACACGAGCAGGAGTGAACAAGATAGAGCAGGATGACCGAATAGCCATTGATACAAAGTTGCTGCAAACAAAAGCTCATCAATATGGTGGGATTAGTACAACTGCTCATAGAAAGGTTGGACCAGTACAGTATGGTATTACAAGGTTGTTCTAG 1836 0.4014 MQQDHRKKSSMEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHVSDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLALRLLEKLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFKKQFTHLEETGGKSSPVLPPERKHVSLPRSTIIHSNTVPTKEQSNIASSKIRQTTEEYSNNSRDTENPVPRSIQGLQKFSHAKPGKVVGPVIPYEYASVVKGSYEPRTFMRGSVPPSQPTPPTNHYQRLTSGKQERSATEAEKCVSLQSKLAQQCCVNGQIAPEIAINIDSNPFFMTRAGVNKIEQDDRIAIDTKLLQTKAHQYGGISTTAHRKVGPVQYGITRLF 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3043g00012 611 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium3043g00012 611 FunFam Mitogen-activated protein kinase 15 118 - -
Vium3043g00012 611 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00012 611 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00012 611 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vium3043g00012 611 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00012 611 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vium3043g00012 611 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vium3043g00012 611 MobiDBLite consensus disorder prediction 496 520 - -
Vium3043g00012 611 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 367 - -
Vium3043g00012 611 CDD STKc_TDY_MAPK 24 361 - -
Vium3043g00012 611 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vium3043g00012 611 FunFam Mitogen-activated protein kinase 111 339 - -
Vium3043g00012 611 MobiDBLite consensus disorder prediction 417 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3043g00012 Vium-Chr3043 86097 98519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3043g00012 1 434 MAP Kinase Gene Family AT2G42880 87.558 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium3043g00012 Pkinase 5.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3043g00012 - - gmx:100811788 1061.98