Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3043g00011 ATGCAGCAAGATCACAGAAAAAAGAGTTCAATGGAGATGGAATTTTTCTCCGATTATGGCGATGCCAACAGGTACAAAATTCAAGAAGTCATTGGGAAAGGCAGTTATGGTGTTGTTTGTTCAGCTATAGACACTCATACTGGCGAGAAAGTAGCAATTAAAAAGATACATGATATCTTCGAGCATGTATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCATGTTATGTTGCCACCTTCGAGGAGGGACTTTAAGGATATTTATGTCGTTTTTGAGCTAATGGAGTCTGATCTGCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAATTTTTTCTGTACCAGTTGCTTCGAGCACTGAAGTATATTCACACTGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATATTAGCCAATGCAAACTGTAAACTTAAAATATGTGATTTTGGGTTAGCTAGAGTTGCTTTTAGTGACACGCCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCGGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTGATAGGAAAGCCTCTTTTTCCTGGAAAAAATGTTGTGCATCAGTTGGATCTGATGACAGATCTGCTTGGTACGCCATCGCTTGATACAATATCTCGGGTACGCAATGATAAGGCACGGAGATACCTGACTAGTATGAGGAAAAAACAGCCTATACCATTTGCACAAAAGTTTCCTAATGCAGATCCTTTAGCCCTACGACTACTTGAAAAGTTACTCGCCTTTGATCCAAAAGACCGGCCAACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCGAAAGTTGAGAGGGAGCCATCATGCCAGCCTATTACCAAAATGGAGTTTGAATTCGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATCTTTCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATGAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAGAAGCAATTTACTCATCTTGAGGAAACTGGTGGCAAAAGTAGTCCAGTTCTGCCACCTGAAAGAAAGCATGTATCACTTCCCAGGTCAACAATTATACATTCAAATACAGTACCCACAAAAGAGCAATCAAATATTGCTTCCAGCAAAATCAGGCAAACAACTGAGGAATACAGCAATAATTCCAGGGATACAGAAAATCCTGTGCCAAGGTCCATTCAGGGTCTGCAAAAATTTTCACATGCGAAACCTGGTAAAGTTGTTGGGCCGGTTATTCCATACGAGTATGCAAGTGTTGTCAAGGGTTCATACGAGCCGAGGACATTTATGAGAGGTTCTGTTCCTCCTTCTCAACCTACTCCCCCAACGAATCATTATCAAAGATTAACCTCTGGGAAACAAGAAAGGAGTGAACAAGATAGAGCAGGATGA 1587 0.402 MQQDHRKKSSMEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHVSDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLALRLLEKLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFKKQFTHLEETGGKSSPVLPPERKHVSLPRSTIIHSNTVPTKEQSNIASSKIRQTTEEYSNNSRDTENPVPRSIQGLQKFSHAKPGKVVGPVIPYEYASVVKGSYEPRTFMRGSVPPSQPTPPTNHYQRLTSGKQERSEQDRAG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3043g00011 528 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium3043g00011 528 MobiDBLite consensus disorder prediction 492 528 - -
Vium3043g00011 528 MobiDBLite consensus disorder prediction 416 456 - -
Vium3043g00011 528 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00011 528 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00011 528 FunFam Mitogen-activated protein kinase 111 339 - -
Vium3043g00011 528 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 366 - -
Vium3043g00011 528 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Vium3043g00011 528 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vium3043g00011 528 CDD STKc_TDY_MAPK 24 361 - -
Vium3043g00011 528 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vium3043g00011 528 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Vium3043g00011 528 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3043g00011 528 FunFam Mitogen-activated protein kinase 15 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3043g00011 Vium-Chr3043 86096 98519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3043g00011 1 434 MAP Kinase Gene Family AT2G42880 87.558 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium3043g00011 Pkinase 3.9e-68 CL0016