Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3043g00009 ATGATCCCACAACAAGAACCCGATTTAAATCTCAATCACCTTAAGCTATATTACGGAAAGCTGTTTCCTTTTGCCGATTTATGTAGATGGGTGTCTTATGGCAACGATGCGAAGCACCCTGGTTGTGATCAATCCTATATGGGACGGAGAGAGTTTTCCTTCACTCTGGTGGATGATATTTATCTGCGTTTCCAATCTTTCAACAATGCACATGAGCTCGAAAATTCAGTCAAAGAGAAGTCCCCTGTTAAGATAGATATCGGGCCTGTCTACTCTGTTGATCCTGCAAAAAGGTATGCCTATGCGCAGAGTGAAAATAATGTCTTTGCCCCAGTTGAGAGGGAATTGATTTTCGATATAGATATGACAGACTATGATGATGTTAGATACTGCTGCTCTGGTGCTGACGTTTGTTTGGTTTGCTGGCCGTTAATGACTATAGCAATCAAAGTGATTGATACTGCCTTGAGAGATGACTTTGGTTTCAAGCACGTTCTCTGGGTATACAGTGGACGCAGAGGTGTTCATTGCTGGGTCTGTGATGGGAAGGCAAGAAGGCTGTCTAATGAGCAGAGAGGTGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGACGGGTGCTGCCCTTCATCCTTTCTTGGCGACATCATACACTAAAGTTCTCAAAGACTATTTCGAGAAAAGTCTGCTTACCGGACAAAATTTACTTGCTACTGAGGAGAGATATGAGAAAATTCTAAGCATGATTCCTGATGAATCTATTGCTTCTGAACTTCGGGGGAGATGGCACGATAGTAGGCGGTCTTCTAGTACAAAAGAAGACATCAATGTTGTTCGATGGGAACAACTCAAACAGTTGCTGCAATCTGGAAAACATAAGGCCCAAGGGCTGCGCCGATGTGTTGAAGAGATTGTGTTCTCCTTTACATATCCGAGGCTTGATATGGAGGTTTCTAAACATATGAATCATTTGCTCAAGGCACCATTCTGTGTACATCCTAAAACAGGTCGTGTTTGTGTCCCAATTGATCCAAATCGGTGCGACGAATTTGATCCTACTACAGTGCCCACCCTTTCACAGCTGATAGAAGAGCTTAATTACGAAGGCTCAAGATCTGATGTTGATGGTGCAGAATTGAATAGAACTTCGCTTGGACATGCCATTACGCTCTTCAGATCGTCATTCTTACAGCCTTTATTAAAAGCCTGCAAGGAAGAGATAGAAAATTCGTATAACGTAAAATTGCAGCAGTCAAAGAATTCCCTTGGTTGGTAA 1305 0.423 MIPQQEPDLNLNHLKLYYGKLFPFADLCRWVSYGNDAKHPGCDQSYMGRREFSFTLVDDIYLRFQSFNNAHELENSVKEKSPVKIDIGPVYSVDPAKRYAYAQSENNVFAPVERELIFDIDMTDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTALRDDFGFKHVLWVYSGRRGVHCWVCDGKARRLSNEQRGAIADYFRVYKGNENSHKKVSLTGAALHPFLATSYTKVLKDYFEKSLLTGQNLLATEERYEKILSMIPDESIASELRGRWHDSRRSSSTKEDINVVRWEQLKQLLQSGKHKAQGLRRCVEEIVFSFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCDEFDPTTVPTLSQLIEELNYEGSRSDVDGAELNRTSLGHAITLFRSSFLQPLLKACKEEIENSYNVKLQQSKNSLGW 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3043g00009 434 PANTHER DNA PRIMASE SMALL SUBUNIT 6 419 - -
Vium3043g00009 434 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 373 IPR014052 GO:0003896|GO:0006269
Vium3043g00009 434 CDD AE_Prim_S 38 362 IPR014052 GO:0003896|GO:0006269
Vium3043g00009 434 FunFam DNA primase 1 415 - -
Vium3043g00009 434 Pfam DNA primase small subunit 118 353 IPR002755 GO:0003896|GO:0006269
Vium3043g00009 434 Gene3D DNA primase, PRIM domain 2 415 - -
Vium3043g00009 434 SUPERFAMILY Prim-pol domain 12 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3043g00009 Vium-Chr3043 73949 78773 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3043g00009 3 434 Core DNA Replication Machinery Family AT5G41880 66.435 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3043g00009 K02684 - gmx:100780574 827.394