Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3043g00004 ATGGATAGAAAGCAAGAACAAGACAAGGGGAACTCAAACATGTCTGGCATTGATGTCACTGTAATAACTCCAAAAGTCCCAAAAGCAGTTTCACCTGTTTCTTCTGCAGCAGAGGGGGACACCTTAAGGCGGCCACGTGGACGGCCAGCCGGCTCAAAAAACAAGCCTAAACCACCAATAATTGTCACCAGAGAAAGAGCCAATGCACTGAAGGCTCATGCCATGGAAGTGAGTTCAGGCTGTGATGTGAATGAATGTTTATTGAACTTTGCAAGGAGAAAGCAACGTGGCCTTTATATACTCAATGGAACAGGCTGTGTAACAAATGTAACACTGCGCCAACCAGGGTCATCAGGTGCCATTGTGACCCTTCATGGTAGGTTTGAGATTCTGTCCCTGCTGGGGTCAATCCTTCCCCCACCAGCCCCTCCAGGGATCACAGGCCTCACAATTTACTTGGCAGGTGCTCAAGGGCAAGTTGTGGGAGGTGCTGTGGTTGGTGCTTTGATTGCATCAGGCCCTCTTGTAATCATGGCTGCATCATTCATGCATGCTACTTTCGATCGTCTGCCTTTGGAAGATGATGAACTCTCTGCTGCAATGCAGAATCAGCATTACCAAAATGGACGCACCCACCATCTTGACATCTCTGACTTGTATGCAATGCCACAGAACCTGCTCATGAATGGTACAATGCCCCAAGAGATATACTCTTGGGCACCAGGGCGGAACTTGTCAAAAACCTGA 747 0.4833 MDRKQEQDKGNSNMSGIDVTVITPKVPKAVSPVSSAAEGDTLRRPRGRPAGSKNKPKPPIIVTRERANALKAHAMEVSSGCDVNECLLNFARRKQRGLYILNGTGCVTNVTLRQPGSSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPLVIMAASFMHATFDRLPLEDDELSAAMQNQHYQNGRTHHLDISDLYAMPQNLLMNGTMPQEIYSWAPGRNLSKT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3043g00004 248 FunFam AT-hook motif nuclear-localized protein 70 211 - -
Vium3043g00004 248 ProSiteProfiles PPC domain profile profile. 67 205 IPR005175 -
Vium3043g00004 248 MobiDBLite consensus disorder prediction 1 59 - -
Vium3043g00004 248 Gene3D - 69 213 - -
Vium3043g00004 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 72 182 IPR005175 -
Vium3043g00004 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 210 IPR014476 GO:0003680
Vium3043g00004 248 CDD DUF296 73 153 IPR005175 -
Vium3043g00004 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3043g00004 Vium-Chr3043 26779 27996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3043g00004 1 247 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 66.265 1.16e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3043g00004 - - gmx:100804941 429.483