Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3040g00016 ATGTATGATTTGGGAGTGGTTATGCCTGTGGGAATGGATATTCCTCCTCCTTTTAGTGTGATAGAGGACAAAGACAGTGCATTTACAATGGAAGATGATAAATCGGGAGATTTGGATAATCTAAAACCAATAGTCAAGGGTAAGCCTCCCAGGCATGTTTCGAGTTTGAGGCACAGCGTTAGCTCCACCAGATTGATGGCAGTAGCAGATTTGAGTTTGGATGTGGGGGTTACTGGAAAGTCATCTTCTGAAGAAAAGACGGAATTTCTACCAATATTTCGGTCAGGAAGTTGTGCTGAAAGAGGACCCAAACAGTATATGGAAGACGAACACGTATGCATTGATGATCTTATTCAGCATATAGGTCCCGCCTCAACTATTCCTTTACCTGGAGCTTTTTATGGGGTGTTTGATGGCCATGGAGGTACAGACGCAGCTTTGTTCATAAGAAATAACATCCTCAAATTCATAGTTGAGGACTCCCATTTTCCAACTTGCGTGGGGCACGCAATTACAAGTGCGTTTCTGAAAGCAGATTATGCATTTGCAGATTCAAGTTCTCTTGATATCTCCTCTGGGACCACTGCTTTAACTGCTCTTGTATCCGGAAGGTAA 615 0.4293 MYDLGVVMPVGMDIPPPFSVIEDKDSAFTMEDDKSGDLDNLKPIVKGKPPRHVSSLRHSVSSTRLMAVADLSLDVGVTGKSSSEEKTEFLPIFRSGSCAERGPKQYMEDEHVCIDDLIQHIGPASTIPLPGAFYGVFDGHGGTDAALFIRNNILKFIVEDSHFPTCVGHAITSAFLKADYAFADSSSLDISSGTTALTALVSGR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3040g00016 204 SUPERFAMILY PP2C-like 88 203 IPR036457 -
Vium3040g00016 204 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
Vium3040g00016 204 Gene3D - 86 204 IPR036457 -
Vium3040g00016 204 ProSiteProfiles PPM-type phosphatase domain profile. 94 204 IPR001932 -
Vium3040g00016 204 Pfam Protein phosphatase 2C 95 203 IPR001932 -
Vium3040g00016 204 PANTHER PROTEIN PHOSPHATASE 2C 82 201 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3040g00016 Vium-Chr3040 73263 75377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3040g00016 10 204 PP2C-type Phosphatase Gene Family AT2G33700 58.291 3.59e-73 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3040g00016 K14803 - gmx:100778015 348.206