Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3040g00014 ATGAATTCGTTTCGGGTGGTTTGTTGGGTGGTGTGGTGTCTGGGATTTGTGGGGGCTGCAAACGTGTCGTCCTCGAGACCCGCCATCGTCAACATTGGAGCAATCTTCAACCTCGATTCTATTCTAGGGAAAGTGGCTAAAATTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACTCTAGCATTCTACATGGAACTAAAATTGTTCTCACCATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCTATAATAGGACCACAATCTTCTGTGGTTGCGCATATAATATCCCATGTTGCAAATGAACTACGAGTTCCTTTGTTGTCATTTGCCGCAACAGACCCTACCCTGACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGAAGGCTGTTGCAGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCAATATACGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAATTCCGGAACTGAAGTCAACCGGGGAGAAATTACTAGTTTGCTGGTGAAAGTGGCACTGATGCAGTCTCGAGTCATTGTTCTCCATGCACAAACTGATTATGGTTTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAAACAATGGCTACGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCTTCTCTCCCTTCAGAAACAATGGATGTTCTCCAGGGAGTACTTGTTCTGCGCCAGCATACACCTGACTCAGATAGAAAAAGGGGATTTGTCTCTCGGTGGAACAAGTTGACCGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTACGCTTATGATTCTGTGTGGCTTGTTGCACGGGCCCTTGATGATTTTTTCAGTCAGGGTGGGGTTCTTTCGTCTACGAATTACACAAGTTTGGGTGGTGGTGATGATAAGGGAAGTGATTTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGAACAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAAGCAGATCGATCTCTCGTTCATCCTGCCTATGATGTGCTTAATGTGGTTGGAAGTGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCAAAGCCACCTAATAGATCTAGTGCGAATCAGAATCTTTACAGTGTGATATGGCCTGGAGAAACATTCTCTAAACCGCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGGATTGGTGTGCCTATCCGAGTCAGTTATCGTGAATTTGTCTCACCAGTGAAGGGAACTGAGATGTTCAAAGGTTTTTGTGTTGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCCGTTCCTTACCAATTTGTTCCATTTGGAGACGGACACAAAAATCCAAGCTACACAGAACTTGTCCGCTTGATCACAACTGGTTACTTTGATGGTGCCATTGGTGACATTGCTATTGTCACAAATCGGACAAGGGTTGTAGATTTTACACAACCATATGCAGCATCGGGACTTGTTGTGGTGGCCCCATTTACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGCATGTTTCTTCCTTTTCATAGGGATAGTTATATGGATTCTGGAACACAGGATCAATGATGAGTTCAGAGGTCCACCTAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTGGTCTTGGTCGGTTTGTGATGCTTCTATGGCTATTTGTGGTATTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCTCCTATCAGTGGAATAGATAGCTTAAAGGCTGGTGATGAACCTATAGGATACCAAGTTGGTTCATTTGCAGAACATTACTTGACTCAAGATATTGGAATATCCAAATCCAGGCTTATTGCCCTTGGAACTCCTGAAGAATATGCTATGGCCCTAAAGCTTGGTCCTAAAAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAAATATTCTTATCAAGCCAGTGCACCTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGCTTTGCATTCCCTCGGGACTCCCCTTTGGCTGAGGATATGTCAACAGCCATTCTACAACTTTCTGAAACGGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTTTAGACAATGCTGAAATCGATTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTATTTCTCATTTGTGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATCATGTTCCAGTTATGGAAATCTCCTCCTTCTGAACCTCCACCTTCTACTACTGCCTGGTCAATTTCTGGTCGTTTTCAGAGATTTCTCTCGCTCATTGACGAGAAAGAAGATCCACCAACGAGTAATGGAAGAAAGAGAGAAAGATCACTTGAAGATCAACTGGTAAGACAGCCAAAGAGGGTACAACTACAACTACAAACTACAAACAGAAATGGCACCTAA 2775 0.4368 MNSFRVVCWVVWCLGFVGAANVSSSRPAIVNIGAIFNLDSILGKVAKITLEEAVKDVNADSSILHGTKIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTNNGYVWIVTDWLSSLLDSASLPSETMDVLQGVLVLRQHTPDSDRKRGFVSRWNKLTGGSLGLHSYGLYAYDSVWLVARALDDFFSQGGVLSSTNYTSLGGGDDKGSDLNLDAMSIFDNGTLLLNNILQSDFVGLSGRMKFEADRSLVHPAYDVLNVVGSGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQNLYSVIWPGETFSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVKGTEMFKGFCVDVFTAALNLLPYAVPYQFVPFGDGHKNPSYTELVRLITTGYFDGAIGDIAIVTNRTRVVDFTQPYAASGLVVVAPFTKINSGGWAFLQPFTPLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSGLGRFVMLLWLFVVLILTSSYTASLTSILTVQQLSSPISGIDSLKAGDEPIGYQVGSFAEHYLTQDIGISKSRLIALGTPEEYAMALKLGPKKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAEDMSTAILQLSETGDLQRIHDKWMTRSSCLDNAEIDSDRLQLKSFWGLFLICGIACFVALLLHFLQIMFQLWKSPPSEPPPSTTAWSISGRFQRFLSLIDEKEDPPTSNGRKRERSLEDQLVRQPKRVQLQLQTTNRNGT 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3040g00014 924 MobiDBLite consensus disorder prediction 884 904 - -
Vium3040g00014 924 CDD PBP1_GABAb_receptor_plant 31 423 IPR044440 -
Vium3040g00014 924 Gene3D - 462 577 - -
Vium3040g00014 924 Pfam Ligand-gated ion channel 810 840 IPR001320 GO:0015276|GO:0016020
Vium3040g00014 924 Pfam Bacterial extracellular solute-binding proteins, family 3 488 809 IPR001638 -
Vium3040g00014 924 SUPERFAMILY Periplasmic binding protein-like I 25 459 IPR028082 -
Vium3040g00014 924 Pfam Receptor family ligand binding region 51 405 IPR001828 -
Vium3040g00014 924 Gene3D - 774 807 - -
Vium3040g00014 924 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00014 924 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00014 924 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00014 924 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00014 924 Gene3D - 145 420 - -
Vium3040g00014 924 FunFam Glutamate receptor 578 708 - -
Vium3040g00014 924 SUPERFAMILY Periplasmic binding protein-like II 443 810 - -
Vium3040g00014 924 FunFam Glutamate receptor 145 297 - -
Vium3040g00014 924 SMART GluR_14 468 810 IPR001320 GO:0015276|GO:0016020
Vium3040g00014 924 FunFam Glutamate receptor 462 577 - -
Vium3040g00014 924 PIRSF IGluLR_plant 1 923 IPR017103 -
Vium3040g00014 924 FunFam Glutamate receptor 704 812 - -
Vium3040g00014 924 Gene3D - 49 395 - -
Vium3040g00014 924 CDD GluR_Plant 465 807 - -
Vium3040g00014 924 Gene3D - 578 708 - -
Vium3040g00014 924 Gene3D - 738 773 - -
Vium3040g00014 924 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 857 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3040g00014 Vium-Chr3040 64812 69181 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3040g00014 9 903 Ion Channels AT1G42540 63.987 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3040g00014 K05387 - gmx:100777478 1595.1