Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3040g00012 ATGAATTCGTTTCGGGTGGTTTGTTGGGTGGTGTGGTGTCTGGGATTTGTGGGGGCTGCAAACGTGTCGTCCTCGAGACCCGCCATCGTCAACATTGGAGCAATCTTCAACCTCGATTCTATTCTAGGGAAAGTGGCTAAAATTACATTGGAGGAAGCCGTGAAAGATGTTAACGCCGACTCTAGCATTCTACATGGAACTAAAATTGTTCTCACCATGCAAAATTCCAATTACAGCGGTTTCTTAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGGTTGCTATAATAGGACCACAATCTTCTGTGGTTGCGCATATAATATCCCATGTTGCAAATGAACTACGAGTTCCTTTGTTGTCATTTGCCGCAACAGACCCTACCCTGACATCGCTGCAGTTTCCTTTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGAAGGCTGTTGCAGAAATCATTGATTACTATGGTTGGAAGGAGGTGATTGCAATATACGTGGATGATGATTATGGACGGAATGGTGTGGCTGCTTTGGACGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAATTCCGGAACTGAAGTCAACCGGGGAGAAATTACTAGTTTGCTGGTGAAAGTGGCACTGATGCAGTCTCGAGTCATTGTTCTCCATGCACAAACTGATTATGGTTTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAAACAATGGCTACGTGTGGATAGTCACAGACTGGCTCTCTTCACTTTTGGATTCTGCTTCTCTCCCTTCAGAAACAATGGATGTTCTCCAGGGAGTACTTGTTCTGCGCCAGCATACACCTGACTCAGATAGAAAAAGGGGATTTGTCTCTCGGTGGAACAAGTTGACCGGTGGCTCTTTGGGGTTACATTCTTATGGCCTCTACGCTTATGATTCTGTGTGGCTTGTTGCACGGGCCCTTGATGATTTTTTCAGTCAGGGTGGGGTTCTTTCGTCTACGAATTACACAAGTTTGGGTGGTGGTGATGATAAGGGAAGTGATTTGAACCTTGATGCAATGAGCATTTTTGACAACGGAACGCTTCTGCTGAACAACATATTGCAGAGTGATTTTGTTGGACTATCAGGTCGAATGAAATTTGAAGCAGATCGATCTCTCGTTCATCCTGCCTATGATGTGCTTAATGTGGTTGGAAGTGGCCTTAGGAGGGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTATCTCCTGAGATACTGTATGCAAAGCCACCTAATAGATCTAGTGCGAATCAGAATCTTTACAGTGTGATATGGCCTGGAGAAACATTCTCTAAACCGCGTGGATGGGTCTTCCCAAATAATGGTAGACAGTTGAGGATTGGTGTGCCTATCCGAGTCAGTTATCGTGAATTTGTCTCACCAGTGAAGGGAACTGAGATGTTCAAAGGTTTTTGTGTTGATGTATTCACAGCAGCTCTGAACTTGTTGCCTTATGCCGTTCCTTACCAATTTGTTCCATTTGGAGACGGACACAAAAATCCAAGCTACACAGAACTTGTCCGCTTGATCACAACTGGTTACATTTTCTTGGTACAGTACTTTGATGGTGCCATTGGTGACATTGCTATTGTCACAAATCGGACAAGGGTTGTAGATTTTACACAACCATATGCAGCATCGGGACTTGTTGTGGTGGCCCCATTTACAAAAATTAATTCTGGTGGTTGGGCTTTCCTGCAGCCATTTACTCCTCTTATGTGGATTGTGACTGCATGTTTCTTCCTTTTCATAGGGATAGTTATATGGATTCTGGAACACAGGATCAATGATGAGTTCAGAGGTCCACCTAGACAGCAAATTATAACCTTGTTATGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTGGTCTTGGTCGGTTTGTGATGCTTCTATGGCTATTTGTGGTATTGATCCTCACTTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCTCCTATCAGTGGAATAGATAGCTTAAAGGCTGGTGATGAACCTATAGGATACCAAGTTGGTTCATTTGCAGAACATTACTTGACTCAAGATATTGGAATATCCAAATCCAGGCTTATTGCCCTTGGAACTCCTGAAGAATATGCTATGGCCCTAAAGCTTGGTCCTAAAAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCTTATGTTGAAATATTCTTATCAAGCCAGTGCACCTTCAGAATTGTTGGTCAGGAGTTCACCAGAAGTGGCTGGGGCTTTGCATTCCCTCGGGACTCCCCTTTGGCTGAGGATATGTCAACAGCCATTCTACAACTTTCTGAAACGGGTGATCTACAGCGGATTCATGACAAGTGGATGACACGAAGCTCTTGTTTAGACAATGCTGAAATCGATTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTATTTCTCATTTGTGGGATAGCTTGCTTTGTTGCTCTTCTTTTGCATTTTTTGCAGATCATGTTCCAGTTATGGAAATCTCCTCCTTCTGAACCTCCACCTTCTACTACTGCCTGGTCAATTTCTGGTCGTTTTCAGAGATTTCTCTCGCTCATTGACGAGAAAGAAGATCCACCAACGAGTAATGGAAGAAAGAGAGAAAGATCACTTGAAGATCAACTGGTAAGACAGCCAAAGAGGGTACAACTACAACTACAAACTACAAACAGAAATGGCACCTAA 2793 0.4361 MNSFRVVCWVVWCLGFVGAANVSSSRPAIVNIGAIFNLDSILGKVAKITLEEAVKDVNADSSILHGTKIVLTMQNSNYSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELRVPLLSFAATDPTLTSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVAALDDELAARRCRISFKEGINSGTEVNRGEITSLLVKVALMQSRVIVLHAQTDYGFMVFNVARYLGMTNNGYVWIVTDWLSSLLDSASLPSETMDVLQGVLVLRQHTPDSDRKRGFVSRWNKLTGGSLGLHSYGLYAYDSVWLVARALDDFFSQGGVLSSTNYTSLGGGDDKGSDLNLDAMSIFDNGTLLLNNILQSDFVGLSGRMKFEADRSLVHPAYDVLNVVGSGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQNLYSVIWPGETFSKPRGWVFPNNGRQLRIGVPIRVSYREFVSPVKGTEMFKGFCVDVFTAALNLLPYAVPYQFVPFGDGHKNPSYTELVRLITTGYIFLVQYFDGAIGDIAIVTNRTRVVDFTQPYAASGLVVVAPFTKINSGGWAFLQPFTPLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITLLWFSLSTLFFSHRENTMSGLGRFVMLLWLFVVLILTSSYTASLTSILTVQQLSSPISGIDSLKAGDEPIGYQVGSFAEHYLTQDIGISKSRLIALGTPEEYAMALKLGPKKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAEDMSTAILQLSETGDLQRIHDKWMTRSSCLDNAEIDSDRLQLKSFWGLFLICGIACFVALLLHFLQIMFQLWKSPPSEPPPSTTAWSISGRFQRFLSLIDEKEDPPTSNGRKRERSLEDQLVRQPKRVQLQLQTTNRNGT 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3040g00012 930 Gene3D - 145 420 - -
Vium3040g00012 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 863 IPR015683 -
Vium3040g00012 930 CDD PBP1_GABAb_receptor_plant 31 423 IPR044440 -
Vium3040g00012 930 Gene3D - 744 779 - -
Vium3040g00012 930 FunFam Glutamate receptor 584 714 - -
Vium3040g00012 930 SUPERFAMILY Periplasmic binding protein-like I 25 459 IPR028082 -
Vium3040g00012 930 CDD GluR_Plant 465 813 - -
Vium3040g00012 930 Pfam Bacterial extracellular solute-binding proteins, family 3 543 815 IPR001638 -
Vium3040g00012 930 Gene3D - 49 395 - -
Vium3040g00012 930 MobiDBLite consensus disorder prediction 890 910 - -
Vium3040g00012 930 SMART GluR_14 468 816 IPR001320 GO:0015276|GO:0016020
Vium3040g00012 930 FunFam Glutamate receptor 710 818 - -
Vium3040g00012 930 FunFam Glutamate receptor 462 583 - -
Vium3040g00012 930 Gene3D - 584 714 - -
Vium3040g00012 930 PRINTS Metabotropic glutamate GPCR signature 98 124 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00012 930 PRINTS Metabotropic glutamate GPCR signature 130 149 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00012 930 PRINTS Metabotropic glutamate GPCR signature 165 182 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00012 930 PRINTS Metabotropic glutamate GPCR signature 149 165 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vium3040g00012 930 FunFam Glutamate receptor 145 297 - -
Vium3040g00012 930 PIRSF IGluLR_plant 1 929 IPR017103 -
Vium3040g00012 930 Gene3D - 780 813 - -
Vium3040g00012 930 Pfam Receptor family ligand binding region 51 405 IPR001828 -
Vium3040g00012 930 Gene3D - 462 583 - -
Vium3040g00012 930 SUPERFAMILY Periplasmic binding protein-like II 443 816 - -
Vium3040g00012 930 Pfam Ligand-gated ion channel 816 846 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3040g00012 Vium-Chr3040 64812 69341 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3040g00012 9 909 Ion Channels AT1G42540 63.567 0.0 1222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3040g00012 K05387 - gmx:100777478 1588.55