Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3040g00001 ATGACTCGTCCCTTCAGATATTTAGGCGAGCGCAACTCGTCCAACGACTCCGCCGTTGTCGACTCCGACTTCGTCGTCGTCCTCGCCGCCCTCCTCTGCGCACTCATCTGCGTCCTCGGCCTCGTCGCCGTCGCGCGCTGCGGCTGTCTCCGCCGCCTCCGCCTCTCCTCTGCCCCCACTCCCCAGCCTCCTCCCGCTGCCGCCAACAAAGGCGTCAAGAAAAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACAGCCGAATCCGCAGGTAAGTTCGCCGATTGCGCGATCTGCCTCTCGGAGTTCGCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCATGTTAGCTGTATCGACGCCTGGCTCAGATCGCACTCCTCGTGTCCATCGTGCCGTCAGATTCTGGTGGTTACTCGGTGCGACAAGTGCGGCGGGATCCCGGCTCCGTCGAGCTCCAGCTCCGCGCCCCCGCCGCAGTCGGAATCCGAGGCCAGATTCAAGGTAAGGGAGGATAACGGCAATAGGTTCTTGCCTTAG 555 0.6342 MTRPFRYLGERNSSNDSAVVDSDFVVVLAALLCALICVLGLVAVARCGCLRRLRLSSAPTPQPPPAAANKGVKKKVLRSLPKLTATAESAGKFADCAICLSEFAAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVTRCDKCGGIPAPSSSSSAPPPQSESEARFKVREDNGNRFLP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3040g00001 184 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vium3040g00001 184 Pfam Ring finger domain 95 138 IPR001841 -
Vium3040g00001 184 SMART ring_2 96 137 IPR001841 -
Vium3040g00001 184 CDD RING-H2_EL5-like 95 138 - -
Vium3040g00001 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 142 IPR013083 -
Vium3040g00001 184 SUPERFAMILY RING/U-box 80 143 - -
Vium3040g00001 184 MobiDBLite consensus disorder prediction 153 184 - -
Vium3040g00001 184 MobiDBLite consensus disorder prediction 169 184 - -
Vium3040g00001 184 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3040g00001 Vium-Chr3040 10917 11914 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3040g00001 5 184 C3H Transcription Factor Family AT1G20823 62.887 2.06e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3040g00001 - - pvu:PHAVU_009G007400g 290.812