Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3025g00001 ATGGAACTCCAACTCTTATTGCAGTTCTTCACAAACAACGTCTATTTCTCTTCTCTTCTCCTTTCACTCACCATCCTCCTTCTTCTCATCGCAATCGCGCGTCTTTCTCACCGAAAGAACATCCTCTGCAGCTGCGAAACATGTCAGGCCTACCTCACTTCAAGCTGGTCCCAATACTTCCACAACCTCTGCGACTGGTACACCCACCTCCTCCGAACCTCCCCCACCAAAACCATCCACATCCACGTGCTGCGCAACACCATCACCGCCAACGTGGAAAACGTTGAGTACATTCTCAAGACCAGGTTCCACAACTTTCCCAAGGGTAAACCCTTCTCTACCATCCTCGGTGACTTCCTCGGCAAAGGAATCTTCAACGTCGATGGCGACACCTGGCGCTTCCAGAAGAAGATGGCCGCCCTCCAACTCAACAACAACGGCGTAACCTTCTTCGCCTTCGAAATCATCAAGAGCGAAATCCATGACAGACTCCTCCCGCTCCTTCACGCGTCGACCCGAAACGGCGCCGTCTTGGACCTGCAGGACGTGTTCCGGAGATTCTCCTTCGATAGCATTTGCCGTTTCTCCTTCGGGCTGGACCCCAAGTGTTTGGAGAAGTCTTTGCCGATGTCGAAGTTCGCGGTTTGCTTTGACTTGGCGTCGAAGCTCTCTGCGGAAAGAGCCATGGCGTTGTCGCCTTATGTGTGGAAGGTGAAGAGGTTTTTCAATGTGGGGAGCGAGAAACGGCTTCGGGAAGCGGTTGAAGTGATTAACGGGTTGGCCAGGGAGGTCATAAAGCAAAGGCGCGAAATGGGTTTCTCTGAAAACAAGGACTTGTTGTCGCGGTTCATGAGCACGGTCCACGACGATGACACGTATTTACGAGACATTGTTGTGAGCTTCTTATTGGCGGGTCGTGACACAGTGGCTTCGGCTCTCACCAGCTTCTTTTATCTGTTAGGGAAAAATCCAGAAGTTGAATCGGAGATTCGTGCGGAGGCAGATCGAGTGGTTGGGCCTCATGAGGATCTCACGAGCTTTGAAGAGCTTAAGCAATTGCACTATTTGCAAGCGGCGATGCATGAAAGTCTGAGGCTGTTTCCACCGATCCAGTTTGATTCAAAGTTTTGTTTGGAGGAGGATGTGTTACCCGATGGGACGAAAGTGGAGAGTGGAACTAGGGTTACTTACCATCCCTATGCGATGGGAAGGTTGGAGGAAATATGGGGCTGTGACTGTTCGGAGTTTAGGCCAGAAAGATGGTTGAAGGATGGGGTGTTCCACCCCGAAAGTCCGTTCAAGTACCCGGTTTTTCAAGCAGGGTTGAGGGTTTGTTTGGGGAAGGAAATGGCTCTGATGGAGCTCAAAACTGTGGCACTTTCACTGCTTCGAAAGTTCCACATCCAGTTGGTGGAATCATCTTGTGGAAACCCTTATTTCTCCCCTGGACTCACTGCTACCTTTAGGTTTGGCCTTCCCGTGAAGGTTCGTGAGAGAGGATTAGAACAACAACAACTGAACCCTCTCATTCACCTATCCTCTTCCTAG 1548 0.5078 MELQLLLQFFTNNVYFSSLLLSLTILLLLIAIARLSHRKNILCSCETCQAYLTSSWSQYFHNLCDWYTHLLRTSPTKTIHIHVLRNTITANVENVEYILKTRFHNFPKGKPFSTILGDFLGKGIFNVDGDTWRFQKKMAALQLNNNGVTFFAFEIIKSEIHDRLLPLLHASTRNGAVLDLQDVFRRFSFDSICRFSFGLDPKCLEKSLPMSKFAVCFDLASKLSAERAMALSPYVWKVKRFFNVGSEKRLREAVEVINGLAREVIKQRREMGFSENKDLLSRFMSTVHDDDTYLRDIVVSFLLAGRDTVASALTSFFYLLGKNPEVESEIRAEADRVVGPHEDLTSFEELKQLHYLQAAMHESLRLFPPIQFDSKFCLEEDVLPDGTKVESGTRVTYHPYAMGRLEEIWGCDCSEFRPERWLKDGVFHPESPFKYPVFQAGLRVCLGKEMALMELKTVALSLLRKFHIQLVESSCGNPYFSPGLTATFRFGLPVKVRERGLEQQQLNPLIHLSSS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3025g00001 515 SUPERFAMILY Cytochrome P450 56 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS E-class P450 group I signature 435 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS E-class P450 group I signature 445 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 CDD CYP86A 75 472 - -
Vium3025g00001 515 PANTHER CYTOCHROME P450 38 489 - -
Vium3025g00001 515 Pfam Cytochrome P450 86 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS P450 superfamily signature 436 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium3025g00001 515 Gene3D Cytochrome P450 49 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3025g00001 Vium-Chr3025 17623 20251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3025g00001 43 499 Cytochrome P450 AT2G27690 60.691 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3025g00001 K20624 - gmx:100784058 766.533