Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3022g00005 ATGGGTAGATCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGACCCTGGACAACAGAAGAAGACCAGAAACTCGTTGATTACATTCAGAAACATGGCTACGGCAATTGGAGAGTACTTCCAAAGAATGCTGGGTTGCAGAGGTGTGGCAAGAGTTGTCGCCTCCGATGGACAAACTATCTCCGACCAGATATAAAGCGTGGTCGATTCACTTTTGAAGAGGAAGAGACCATAATACAACTACATAGCATTCTCGGAAACAAGTGGTCGGCTATTGCTTCTCGTTTGCCTGGAAGAACAGACAATGAAATCAAGAATTACTGGAACACCCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTAACGCATAGGCCAAGGCTTGATCTTTTGGACCTCTCTTCCATCCTAAGTTCATCCCTTTATGGTCCGACACACATGAACATCCAAAGACTCCTCGGTACACAGACAATGGTGAACCCTGAACTTTTAAAGCTTGCTTCATCGCTCTTTTCTTCTCAGCATCGTGAAAACGTCAACGTCTGTCCACAAAATTGTGAATACAACTTGCTCTGTGATCCACAAATTAACCAAATCCCACACCTGGTACAGACTCAGGACTTTGCTCAAAAACCATGTAAAACACCAGACGATATCGATACAATGAATCCCCCTTGTTCTTCCTTGTCAATGCCTTTCGCTCAAGAACAGTTTCTTGAATGCAATATGAACCCTTACCCTTCTGTTTTCCATGACTCCTCCTTCCAACAACATTCTCAACCAAGTGAATTACAATGCAACGTAATCGATACTAGCTATGTTGCTCAATTACCAAGCTATAACTACCATGGCTCTGATTATGACGCAAATCTTATGGACCCTTCCGAATCCTCAACCTATAATAACCATTCCCATAACAGCAATCAGAACTTCAGCTTTGCTTCGGTTATCTCAACGCCTTCGTCAAGCCCCACGCCGTTAAATTCGAACTCGACGTACGTCAATGGAAGTAGCAGTACTGAGGATGAGATAGAAAGCTATGTGAGCAGCAACTTGTTGAGATTAATTGAAATGCCAGACATGTTAGGTGTTAATGAGTTCATATAA 1113 0.4286 MGRSPCCDKNGLKKGPWTTEEDQKLVDYIQKHGYGNWRVLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSSLYGPTHMNIQRLLGTQTMVNPELLKLASSLFSSQHRENVNVCPQNCEYNLLCDPQINQIPHLVQTQDFAQKPCKTPDDIDTMNPPCSSLSMPFAQEQFLECNMNPYPSVFHDSSFQQHSQPSELQCNVIDTSYVAQLPSYNYHGSDYDANLMDPSESSTYNNHSHNSNQNFSFASVISTPSSSPTPLNSNSTYVNGSSSTEDEIESYVSSNLLRLIEMPDMLGVNEFI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3022g00005 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium3022g00005 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 299 - -
Vium3022g00005 370 CDD SANT 69 112 IPR001005 -
Vium3022g00005 370 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium3022g00005 370 CDD SANT 16 61 IPR001005 -
Vium3022g00005 370 MobiDBLite consensus disorder prediction 324 343 - -
Vium3022g00005 370 SMART sant 66 114 IPR001005 -
Vium3022g00005 370 SMART sant 13 63 IPR001005 -
Vium3022g00005 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium3022g00005 370 FunFam Transcription factor MYB39 69 130 - -
Vium3022g00005 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium3022g00005 370 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium3022g00005 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium3022g00005 370 FunFam MYB-related transcription factor 13 66 - -
Vium3022g00005 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium3022g00005 370 Gene3D - 69 116 - -
Vium3022g00005 370 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3022g00005 Vium-Chr3022 128455 130231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3022g00005 1 370 MYB Transcription Factor Family AT4G21440 54.948 9.79e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3022g00005 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3022g00005 K09422 - gmx:100808310 494.967