Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3022g00002 ATGGGTGATGGAGAAGAATTCGTCGGAGCTTCGGGTCTGCGGCGAGCGGTGGAGCTCATCCTTGCCGTGCTCTCTCTCTCGCACTCGATTCGTGTCTTCGCGGGGAAATGGCAGCTCATTCGTAACAAGCTGGAGGAGCTTCACGGAGGTTTAGTTGCCGCCGAGAACTGCGACCCCGGGGAGAGCCCGTCGCTTTCACGGCTGGTGGGGGCGGTGGCGGCCACCGCGACGGAATGCCACGATCTGTGTCGGCGCTGCGTGGATGTTTCCTACAGTGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGGCGTTCGCGAAGCTCGATGCGCACGCGAGGAAGCTCTCTGAGATATACAAAAGGGGGATTTTAACAAATGGGTTTGCGCTGGTTGTGTCAAAGCCGACTCTTGGCGGTTCGAAAGAGGACATGAGGTTCTACGTGAGGGACTTAACGACGAGGATGAAGATTGGAGATTTGGGGATGAAACGACAGGCGTTGCGGAACCTCCTAGAAGTTGTGCTGGAGGATGAAAAGTATGTGAAGGTGGTTGTTGGCATGGGTGACGTGGTTCATTTGTTGGTGGGGTTTTTGGGTTCTAATGAGGCGGAAATCCAGGAGGAGAGTGCTAAGGTGGTTTCTGTGGTTGCTGGATTTGATTCTTACAAAGGGGTTTTGGTTGGGGCGGGGGTGATTGCTCCTTTGGTTAAGGTTCTGGATTGTGGGAGTGATTCGGGGAAGGTTGCGGCGGCGAGGTGTTTGGTGAAGTTGACTGAAAATTCGGACAATGCTTGGTGTGTTTCGGCTCATGGGGGGGTCAGTGTGCTGTTGAAGATTTGTGGTGGTGGTGATTGTGGAGGTGATTTGGTGGCACCTGCTTGTGGGGTGTTGAGGAATCTCGTTGGCGTTGAGGAGATTAAGAGGTTTATGGTTGATGAGGGTGCTGTGTCAACTTTCATTAAGCTCGTGAGATCGAAGGAGGAAGCGATTCAGGTGAATTCGATTGGGTTCATTTTGAGTATTGCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGATGAGAGAGGGAGGGATTCGTGCTTTGTTGCGTGTTTTGCATCCTAAGTGGTCTTATTCATGTAAAACAAGGGAGGTAGCAATGAGGGCTGTTGAGGATTTGTGTTTCTGTTCACCTAGTTCTGTGGGTGTGTTGATGAGTTATGGCTTTGTGGATCAACTGACATATTACATTCGAAATGGGGAGGTTTCGATTCAGGAGTTGGCATTGAAAGTGGCGTTTAGGTTGTCTGGAACATCTGAGGAGGCCAAGAAAGCAATGGGGGACGCAGGGTTTATGCCAGAGTTTGTTAAGTTTCTTAATGCAAAGTCCTTTGAGGCTCGAGAAATGGCAGCCGAGGCACTCTCTGGCATGGTTACGGTGCCTAGAAATAGAAAGCGATTCGTGCAGGATGACCATAATATTGCCCTTCTTCTGCAGTTGCTTGATCCAGAGGAGGGGAATTCCGGTAATAAAAAGTTCTTAATCTCTATATTAATGTCCTTAACGAGTTGCACTAGTGGGAGGAAAAAGATTGTTAGTTCTGAATATGCAAAAAACATAGAAAAACTCGCTGAAGTTTCTTCTGAAGCCAAGAAACTTGTCAAGAAGCTATCCACAAACCGGTTCCGAAGTATGTTGAATGGAATCTGGCACTCGTGA 1698 0.4953 MGDGEEFVGASGLRRAVELILAVLSLSHSIRVFAGKWQLIRNKLEELHGGLVAAENCDPGESPSLSRLVGAVAATATECHDLCRRCVDVSYSGKLLMQSDLDVAFAKLDAHARKLSEIYKRGILTNGFALVVSKPTLGGSKEDMRFYVRDLTTRMKIGDLGMKRQALRNLLEVVLEDEKYVKVVVGMGDVVHLLVGFLGSNEAEIQEESAKVVSVVAGFDSYKGVLVGAGVIAPLVKVLDCGSDSGKVAAARCLVKLTENSDNAWCVSAHGGVSVLLKICGGGDCGGDLVAPACGVLRNLVGVEEIKRFMVDEGAVSTFIKLVRSKEEAIQVNSIGFILSIASGDELVRQMVMREGGIRALLRVLHPKWSYSCKTREVAMRAVEDLCFCSPSSVGVLMSYGFVDQLTYYIRNGEVSIQELALKVAFRLSGTSEEAKKAMGDAGFMPEFVKFLNAKSFEAREMAAEALSGMVTVPRNRKRFVQDDHNIALLLQLLDPEEGNSGNKKFLISILMSLTSCTSGRKKIVSSEYAKNIEKLAEVSSEAKKLVKKLSTNRFRSMLNGIWHS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3022g00002 565 SUPERFAMILY ARM repeat 144 517 IPR016024 -
Vium3022g00002 565 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 10 564 - -
Vium3022g00002 565 Gene3D - 147 554 IPR011989 -
Vium3022g00002 565 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 315 IPR000225 GO:0005515
Vium3022g00002 565 SMART arm_5 219 259 IPR000225 GO:0005515
Vium3022g00002 565 SMART arm_5 260 302 IPR000225 GO:0005515
Vium3022g00002 565 SMART arm_5 345 388 IPR000225 GO:0005515
Vium3022g00002 565 SMART arm_5 303 343 IPR000225 GO:0005515
Vium3022g00002 565 SMART arm_5 177 218 IPR000225 GO:0005515
Vium3022g00002 565 SMART arm_5 432 472 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3022g00002 Vium-Chr3022 27141 29680 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3022g00002 131 421 U-box Gene Family AT2G23140 25.589 1.18e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3022g00002 - - gmx:100809382 986.867