Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3021g00002 ATGACGTCACACTCTCACTACCAACCCGACTTAGACGCCGACTCCGTCACCTCCTCCCCTCGCTCCGACCATTTCCACGACGCGCCGCCGCGTGTCCGCTTCATGTGCAGTTTTGGCGGCAAGATCCTCCCCCGTCCCCACGACAACCAGCTCCGTTATGTCGGTGGCGACACTCGAATCGTCGCGGTCCACCGCTCCATCTCCTTCTCCGCCCTCATTCTCAAACTCTCCAAACTCTCAGGCATGACCAACATAACCGCGAAGTACCAGCTCCCGAACGAGGATCTGGACGCGTTAATCTCGGTCACGACGGATGAAGACGTGGAGAACATGATGGACGAGTACGACCGCGTGGCACAGAATCAGAACCCGCGATCGGCTCGGCTTCGGCTCTTCCTCTTCCCCGAAGGGGAAGACTCTCGAACCAGTAGCATCAGCTCGCTATTGAACGGTTCAGCCAAACGCGAGAACTGGTTCCTCGACGCACTAAACGGTGGCGTTTCGGGTCTCGAGCGTGGCCGCTCTGAAGCCTCTTCCATGGTCTCGGAAGTACCCGATTACCTCTTCGGATTAGACAACTCCGACGACACACACCAACGCGACCCACGACCCAAGGACCGACCCGTTCTCCAAGACAACGTTTCCGTTTCGGATCTGGGTTCTCCCTCCCCGGTTGTTTCCTCACCGTACTGTTCCACCTCATCAGCGCCCTGCGTTCCTTCTCTTCTGAACCTTCCCCCAGCAAAGACTAAACTTTCAAACTCTGTTGCTGATTCGGACTCCAAGGAAAATCAAATGGAACCTGAAACGGAACCGCAACCCAACCTCAACCAAAACCTCTACGCGGGTAACCCTGTAGTCCACTACCCCCAAGAATCTGCTTATTCTGCTCATACAGTAAACCCGGTTCCTGTTTTCTATGTTCCCGGTCCGGTTCAACCGGGAACTGTGCCGGTTAATATGCAGCAGACACCTTACTCCTACGTTCAACAACCATACCATGCAGTGATGCCATCTCAGGTTCCCATCGTCTACCATCATTTGATTCCGGGTTCGGGTCAAGTATATGGTGCAGGCATGAGGCAGATGACTGAACTGCAACCTTACAATCCTTCCGCCGCAGTGGTTCACGACGGTTTGAAACAGCACGTGTATCATGCCGTGCCAAATTCTGACCTGGTTCCCGTACACCCGATGATGCCCATGACCGGTGCTGATGAACTGCAGAGAGGTGGAGCGGAGTACATGGTGGGTCGGGGCCCCAATTCGCTGAATAACTGA 1281 0.5511 MTSHSHYQPDLDADSVTSSPRSDHFHDAPPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIVAVHRSISFSALILKLSKLSGMTNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRVAQNQNPRSARLRLFLFPEGEDSRTSSISSLLNGSAKRENWFLDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNSDDTHQRDPRPKDRPVLQDNVSVSDLGSPSPVVSSPYCSTSSAPCVPSLLNLPPAKTKLSNSVADSDSKENQMEPETEPQPNLNQNLYAGNPVVHYPQESAYSAHTVNPVPVFYVPGPVQPGTVPVNMQQTPYSYVQQPYHAVMPSQVPIVYHHLIPGSGQVYGAGMRQMTELQPYNPSAAVVHDGLKQHVYHAVPNSDLVPVHPMMPMTGADELQRGGAEYMVGRGPNSLNN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3021g00002 426 Gene3D - 52 135 - -
Vium3021g00002 426 Pfam PB1 domain 47 135 IPR000270 GO:0005515
Vium3021g00002 426 MobiDBLite consensus disorder prediction 1 16 - -
Vium3021g00002 426 CDD PB1_UP2 35 134 - -
Vium3021g00002 426 SUPERFAMILY CAD & PB1 domains 47 143 - -
Vium3021g00002 426 SMART PB1_new 46 136 IPR000270 GO:0005515
Vium3021g00002 426 MobiDBLite consensus disorder prediction 250 279 - -
Vium3021g00002 426 MobiDBLite consensus disorder prediction 1 28 - -
Vium3021g00002 426 PANTHER OS05G0427100 PROTEIN-RELATED 13 361 - -
Vium3021g00002 426 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 51 136 - -
Vium3021g00002 426 MobiDBLite consensus disorder prediction 188 227 - -
Vium3021g00002 426 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3021g00002 Vium-Chr3021 51656 53333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3021g00002 26 171 MAP Kinase Kinase Kinase AT5G57610 45.946 1.58e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3021g00002 - - gmx:100803004 672.93