Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3021g00001 ATGACGAAAAAACCGAAGGCGGAGGGAGCGGAGGAGCCTTTGCCGGACCACCTCCGGTGCGGGCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGAGAGTGAAGGACAGTCTGAAGCTGTGCGAGATTCACTACCTCCAAGGTCGTCATCGGCAGTACAAGGAGAAGGTTCCCGAGTCCTTGAAGCTTCACCGGAAGCGCAAGACGAGCGACGAGGAGCCTAGTGCTGTGGACAATGTCGAATCTAGGGCACGGAGAACCTCGAGAATCGTGAAGAAGAAGCGCAGGCTTTCGGAGGGTCCCGAGTCGCTGGTGGCGGCGACTCCTTCTCTCGCGAAGAAGAAGGCGCCGAAGCAGGGCGATATGCAGTTGGAGCTCATAAGGATGGTTCTCAAGAGAGAGGCGGAGAAGAAGAACAAAAACAACAAGGGCAAGAAGAAAAATAAGAAGAAGAACAAGAAGAAGAAGAAAAAAGAGGAGGAAGAGGAATTGTGTTACGGTGAAGGGGAGTTGAGGAGGGAATTGCCGAATGGTGTGATGGAAATCTCTCCGGCTTCGCCTACTCGTGATTACGACAATGTGGCTTCGCATTGTGACGTGAAAGTTGGTGTTGATTCTAGAACTGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGATAGAGTCCCTGCGGGGAAGTTGCAGATTGCGCCGTATGGATCGAAATTGAAGAAGGGTACCAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGCGAGTCTTGCAATCTGATCCAGTGTTCGAGCTGTGAGAGGGAGTTTTTCTGCATGGATTGCATTAAAGAGCGGTATTTGGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAGCTTGCACTTGTAAGGATTGCTCAGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGACTGGTAAGAGCAGCGTTGATAGAATATTGCATTTTCATTATTTGATCTGCATGCTCCTTCCAGTACTAAAGCATATAAGTGAAGATCAGAATATTGAGCTAGAAACAGAAGCAAAAGTTAAAGGAAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATCACTGCAAGACACCCATTTTGGATCTCCATAGAAGCTGTCCGAGCTGTTCATATAGCCTATGCTCAAGTTGTTGTCTCGAATTAAGTCAGGGAAAAGCATCTGGAGAAATTAACTTATCTACATTCAATCGACCTGATAAAATGAAAAGTAGCAGTGCTAGTGAGAGCCAGGATTTGGACGAGAAGCCCATATCTAGTAGCAATTTAACCGATACTTCAATATTGACTGAGTGGACAAATTGTAATGGCATTGATACTCTGTCATGCCCTCCTAGAGAATATGGTGGTTGTGGTAATAGCCACCTTGAGTTGAGATCTGTTTTCCCCTCCAATTGGATCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGAAACTTCGGATAAAAGTTCAAGCTGCTCATTGTGTTTTGACACTGACCATAATACTAACAGATACAAGCAGTTGCAAGAAGCAGCTTTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCGACTCTGTTGGACATAAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGTCATCCTATAGTGGTTCAAGATGTTCTCCAAAGTACATCAAACCTCAGCTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAATATTACGAGATATGAGAATAATAAAAATGTACTTGAATCTTGTTTGGATTGGTGGGATGTTGAAATTAACATTAGGCAGTACTTTACTGGGTCTGTAAAACGCCGTCCTCAAAGAAATACTTGGCATGAGATGCTCAAACTAAGGGGGTGGCTTTCTTCCCAAATATTCAAAGAGCTGTTTCCAGCTCATTTTGCTGAGGTAATTGATACTCTACCAGTTCAAGAATACATGCATCCCTTGTCAGGCCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGTGCAAAACATGATATTGGACCATATCTCTATATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCTGTGACAACACTCTGCTATGACCCATATGATGTGGTTAATATTATGACACATACCACAGATGCCCCCCTCTCTACAGAACAACTTACAAAAATAAGAAAATTACTGAAAAAGCACAAAACTCTGTGTCAAATGAAGACTATTGGTACTGAGGAGCCACTGGAACAAAAAGTGAATGGAATGAAATTATTGCATGTTGAAGAAACGGAGCAAAGAGGCTTGCAGAGTATGGTTGAAGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACGTCTTGCATCTCAACTGAAGCTAAGAGAGTTTCTAGTCAGAGCATGGACAGCAATGTTTCCCAGAATGGAGACTGTGATTTCTTTTCTGAATCTGATTCGGGACGCACTTTACTTCTCCTTGGGACTGTTCAAACCAATGAAATCTCTAAACAAGATATTCCTAGAAAACCCTTTGAAAGCTCAAAAAGACATAAAAATAAGTTTTCTGAGCATTTGGGTGCCCAGTGGGATGTCTTTCGCAGACAAGATGTACCGAAGCTCATAGAATACCTTAAAAGACACTATGATGAATTTTCTTGTACCCGTGACCATCACAAGAAGATGGTTCACCCAATTCTAGATCAAAACATTTTTCTTGATAGTACTCACAAAAAGAGATTAAAGGAGGAATTTAAGATTGAACCTTGGACTTTTCAGCAACACGTTGGACAAGCTGTCATCATTCCTGCCGGATGTCCATACCAGATCAGGAATTCTAAGTCTTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACAGAGGGTATCCAGTTGATTGATGAGGTCAGACTATTGCCTGAAGAGCATAAAGCAAAAGCAGACATGCTGGAGGTAAAGAAAATGGCGCTTCATAGTATGAATACAGCAATTAAAGAAGTACGTCAACTTACAAGCAAAACATGA 3093 0.4248 MTKKPKAEGAEEPLPDHLRCGRTDGRQWRCRRRVKDSLKLCEIHYLQGRHRQYKEKVPESLKLHRKRKTSDEEPSAVDNVESRARRTSRIVKKKRRLSEGPESLVAATPSLAKKKAPKQGDMQLELIRMVLKREAEKKNKNNKGKKKNKKKNKKKKKKEEEEELCYGEGELRRELPNGVMEISPASPTRDYDNVASHCDVKVGVDSRTVTPRYFRSKNVDRVPAGKLQIAPYGSKLKKGTKGKRKKCHWCQRSESCNLIQCSSCEREFFCMDCIKERYLDTQNEVKKACPVCRGACTCKDCSASQCKDSESKEYLTGKSSVDRILHFHYLICMLLPVLKHISEDQNIELETEAKVKGKNISDIQIKQVEFGCNEKNYCNHCKTPILDLHRSCPSCSYSLCSSCCLELSQGKASGEINLSTFNRPDKMKSSSASESQDLDEKPISSSNLTDTSILTEWTNCNGIDTLSCPPREYGGCGNSHLELRSVFPSNWIKEMEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHNTNRYKQLQEAALREDSNDNYLFCPTLLDISGDNFEHFQKHWGKGHPIVVQDVLQSTSNLSWDPLIMFCTYLEQNITRYENNKNVLESCLDWWDVEINIRQYFTGSVKRRPQRNTWHEMLKLRGWLSSQIFKELFPAHFAEVIDTLPVQEYMHPLSGLLNLAANLPHGSAKHDIGPYLYISYGSADKETDSVTTLCYDPYDVVNIMTHTTDAPLSTEQLTKIRKLLKKHKTLCQMKTIGTEEPLEQKVNGMKLLHVEETEQRGLQSMVEEGMNFFRRVNRTSCISTEAKRVSSQSMDSNVSQNGDCDFFSESDSGRTLLLLGTVQTNEISKQDIPRKPFESSKRHKNKFSEHLGAQWDVFRRQDVPKLIEYLKRHYDEFSCTRDHHKKMVHPILDQNIFLDSTHKKRLKEEFKIEPWTFQQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIQLIDEVRLLPEEHKAKADMLEVKKMALHSMNTAIKEVRQLTSKT 1030
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vium3021g00001 1030 ProSiteProfiles Zinc finger RING-type profile. 247 293 IPR001841 -
Vium3021g00001 1030 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 1029 IPR045109 GO:0032454|GO:0033169
Vium3021g00001 1030 MobiDBLite consensus disorder prediction 52 163 - -
Vium3021g00001 1030 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Vium3021g00001 1030 MobiDBLite consensus disorder prediction 139 154 - -
Vium3021g00001 1030 Gene3D Cupin 553 1002 - -
Vium3021g00001 1030 ProSiteProfiles JmjC domain profile. 680 993 IPR003347 -
Vium3021g00001 1030 MobiDBLite consensus disorder prediction 52 86 - -
Vium3021g00001 1030 MobiDBLite consensus disorder prediction 1 26 - -
Vium3021g00001 1030 MobiDBLite consensus disorder prediction 422 446 - -
Vium3021g00001 1030 SUPERFAMILY Clavaminate synthase-like 560 1016 - -
Vium3021g00001 1030 SMART cupin_9 661 993 IPR003347 -
Vium3021g00001 1030 Coils Coil 132 163 - -
Vium3021g00001 1030 Pfam JmjC domain, hydroxylase 878 971 IPR003347 -
Vium3021g00001 1030 Pfam WRC 15 56 IPR014977 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vium3021g00001 Vium-Chr3021 5640 11843 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3021g00001 7 116 GRF Transcription Factor Family AT4G37740 31.897 2.75e-06 49.3
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vium3021g00001 JmjC 1.2e-10 CL0029