Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3019g00001 ATGCTCTTGGAAATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCATTACTACGCGCATACGTCAAGCAGTATGGTCCTAGAGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATGCAAAGTCATGCTTAGAGAGGTGGAAGAACTACCTGAAGCCTGGCATTAAGAAAGGATCTCTTACAGAGGAAGAGCAGCGTCTTGTCATCAACCTTCAAGCAACACACGGAAACAAGTGGAAGAAAATAGCAGCACAAGTTCCAGGTCGCACTGCCAAGAGGTTAGGAAAGTGGTTGGAAGTGTTCAAAGAAAAGCAGCAAAGAGAAACAAAGGGGAATAACTGCACCATTGACCCGATTAACGATAGCAACTACGAGCATATACTCGAGAGTTTTGCTGAGAAACTTGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCATTTCTGCACACCGATCAACCTGCGCCTGCACAGGCCTTGCTTCCATCTTGGCTTTCAAACTCCAATGGCACAGCACCTGTGAGGCCACCCTCACCTTCTGTGACTCTCAGTCTGTCTCCCTCGGCGGCGCCACCTCCGTGGATGCAACCGGTGAGAGGACCAGACAATGGTGGTCCTCTTGTTTTGGGGAATGTGGGTCCTCATGGAGGTGTTCTAGCATTTGGTGAAAACATGGTGATGTCTGAGCTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCTCAGAAGAAGGAGGCGGCGTGGCGGTTGAGCAGGGTGGAGCTGCAGCTGGAGTCGGAGAAGGCAGGGCGGAGAAGGGAGAAGATGGAGGAAGTTGAAGCAAAGATCAAAGCTTTGAGGGAGGAACAAACAACTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTAGCAGGATTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACATGCGTCTCACCAAATTTCTAGAACAGGTAGGATGCAGATCAAGGCTCTCTGAACCAAATGGAAGATAG 1077 0.4884 MLLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWLEVFKEKQQRETKGNNCTIDPINDSNYEHILESFAEKLVKERPSPSFVMATSNSSFLHTDQPAPAQALLPSWLSNSNGTAPVRPPSPSVTLSLSPSAAPPPWMQPVRGPDNGGPLVLGNVGPHGGVLAFGENMVMSELVECCKELEEVHHALAAQKKEAAWRLSRVELQLESEKAGRRREKMEEVEAKIKALREEQTTALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHMRLTKFLEQVGCRSRLSEPNGR 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3019g00001 358 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 5 353 - -
Vium3019g00001 358 MobiDBLite consensus disorder prediction 173 213 - -
Vium3019g00001 358 ProSiteProfiles Myb-like domain profile. 3 57 IPR001005 -
Vium3019g00001 358 Gene3D - 66 103 - -
Vium3019g00001 358 Coils Coil 307 327 - -
Vium3019g00001 358 CDD SANT 10 57 IPR001005 -
Vium3019g00001 358 Pfam Myb-like DNA-binding domain 11 72 - -
Vium3019g00001 358 MobiDBLite consensus disorder prediction 173 200 - -
Vium3019g00001 358 Coils Coil 268 305 - -
Vium3019g00001 358 CDD SANT 67 98 IPR001005 -
Vium3019g00001 358 SUPERFAMILY Homeodomain-like 8 97 IPR009057 -
Vium3019g00001 358 Gene3D - 8 62 - -
Vium3019g00001 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 57 IPR017930 -
Vium3019g00001 358 SMART sant 62 110 IPR001005 -
Vium3019g00001 358 SMART sant 7 59 IPR001005 -
Vium3019g00001 358 FunFam MYB-related transcription factor 8 62 - -
Vium3019g00001 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Vium3019g00001 358 ProSiteProfiles Myb-like domain profile. 58 98 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3019g00001 Vium-Chr3019 39221 42340 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3019g00001 5 349 MYB Transcription Factor Family AT2G37630 64.932 2.50e-154 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium3019g00001 Myb_DNA-bind_6 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3019g00001 K09422 - gmx:100819082 636.336