Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3017g00003 ATGGCATCAAGCTCAATGTCTTCCACTGGCTCATGGAGTGCCAAGGACAACAAAGCCTTTGAAAGGGCTCTAGCAGTTTATGACAAGGACACTCCTGACCGTTGGTACAATGTTGCTAAGGCTGTTGGTGGAGGGAAGACCCCAGAGGAAGTCAAGAGGCACTATGAACTCCTCCTCAGGGATGTTAGGCACATTGAATCAGGACAAGTGCCCTTCCCAAATTACAAGCAAAGTGGAGGGTCTCAAGAGGAGAAAAGGCTCAGAAACTTGAAACTTCAGTGA 282 0.4823 MASSSMSSTGSWSAKDNKAFERALAVYDKDTPDRWYNVAKAVGGGKTPEEVKRHYELLLRDVRHIESGQVPFPNYKQSGGSQEEKRLRNLKLQ 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3017g00003 93 CDD SANT 18 59 IPR001005 -
Vium3017g00003 93 SMART sant 8 61 IPR001005 -
Vium3017g00003 93 ProSiteProfiles SANT domain profile. 7 63 IPR017884 -
Vium3017g00003 93 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vium3017g00003 93 FunFam Transcription factor SRM1 4 72 - -
Vium3017g00003 93 Gene3D - 2 72 - -
Vium3017g00003 93 MobiDBLite consensus disorder prediction 69 93 - -
Vium3017g00003 93 ProSiteProfiles Myb-like domain profile. 4 59 IPR001005 -
Vium3017g00003 93 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 86 IPR044636 GO:0003700
Vium3017g00003 93 SUPERFAMILY Homeodomain-like 10 67 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3017g00003 Vium-Chr3017 8471 9673 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium3017g00003 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3017g00003 - - gmx:100804396 179.874