Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3015g00005 ATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCGAGGCCTCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCCCAGCCAAGGTACTTTTGCAAGACATGTAGAAGGTATTGGACTGAGGGTGGTTCTCTCAGAAACGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCAACTCCATCAGCTCCGTCACCAGCATCAGCACCAACAAAGAAGCTTCCTGATCTCACACCACCAAATTTCCCTCAATCGGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACTTAGCATATCCTCCAGCCGAGGACTATAACACTGTGTCTAAGTTCATCGAGGTTCCTTACACCACGGAATTAGACAAGGGCAGTCTTCAAAACGCCACTTCCTCATCGACACCGTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCTTCCTCAAGGGGTTTAAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCTTTGCCTGACTTCAAGCCACCACCTGGCCTTAACTTCAGTCTGGAGGGCTTTGAAAATGGTTACGGGGGTCTTCAGGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTAAAGCAGCAGGTTCCAACCACAAATGAGTTCGATCAGCAGAATAGAAGTCAAGGGGATTCATCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCGTGGTAG 792 0.4811 MEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPSPASAPTKKLPDLTPPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSKFIEVPYTTELDKGSLQNATSSSTPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLPDFKPPPGLNFSLEGFENGYGGLQGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRSQGDSSGYWNGMLGGGSW 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3015g00005 263 MobiDBLite consensus disorder prediction 71 85 - -
Vium3015g00005 263 MobiDBLite consensus disorder prediction 237 263 - -
Vium3015g00005 263 MobiDBLite consensus disorder prediction 237 253 - -
Vium3015g00005 263 MobiDBLite consensus disorder prediction 1 23 - -
Vium3015g00005 263 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
Vium3015g00005 263 Pfam Dof domain, zinc finger 19 76 IPR003851 GO:0003677|GO:0006355
Vium3015g00005 263 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 153 IPR045174 GO:0003700|GO:0006355
Vium3015g00005 263 MobiDBLite consensus disorder prediction 96 110 - -
Vium3015g00005 263 MobiDBLite consensus disorder prediction 1 19 - -
Vium3015g00005 263 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
Vium3015g00005 263 MobiDBLite consensus disorder prediction 61 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3015g00005 Vium-Chr3015 24079 25184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3015g00005 9 263 C2C2-Dof Transcription Factor Family AT3G61850 45.357 2.18e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vium3015g00005 zf-Dof 9.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3015g00005 - - gmx:778114 459.529