Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3014g00002 ATGTATTCCGGCGACGGCTCCTCCTTGGACCCCATGTTTTCCGGCACCAGTCTACAGTCACTCCTCTCTCTCAACCCTTCCCTTTTCGCGGACGGCTTCCCCACCTTGGCTTCCCTAACCGACGACCCAACCTTAATCCCGCAAACCGCAGAGCCTCCAAAAATCCTTGTCCCTAAAACCGAACCCTCTCAACCTTTCAAATTCTTCCCCCAATACCATCCAACCCCCTTTCTCCGCCTCCCGCAGCTCCGCTCCCCGGAGCAGCCCCAGCCGAAACGGCAGCGTTTGGAGTCCCCGGTGATCCCGCAGAGCAACCTGGCTCGGCAACGCAGACAGAAGCTGAGCGAGAAAACCCGGTGCCTGCAGAAACTGATGCCGTGGGACAAGAAAATGGACCAAGGCACGCTCCTGGAGGAAGCGTACAAGTACGTGAGGTTTCTTCAGGCGCAGTTCCGCGTGCTACAGTCGATGCCCTCCCATTCGTCTTCTTCCTCGCCTTCCTTCCGCCAAAACTCAGCAGTATTCGTGGATCTGGAGAAACTGAATCGCTCCCAGCTACTGCAGGTACTGGTTAACTCACCCGTGGCACAGACCATGCTATATTCTCAAGGTTTTTGTGTCTTCTCTCTCGAACAGTTGTCTCTCCTCAGAAAATTATCAGATAGGAGGCACCACCACCATAACCACGTTTCCTCCAAAGCTATTTTCAACTAA 714 0.5448 MYSGDGSSLDPMFSGTSLQSLLSLNPSLFADGFPTLASLTDDPTLIPQTAEPPKILVPKTEPSQPFKFFPQYHPTPFLRLPQLRSPEQPQPKRQRLESPVIPQSNLARQRRQKLSEKTRCLQKLMPWDKKMDQGTLLEEAYKYVRFLQAQFRVLQSMPSHSSSSSPSFRQNSAVFVDLEKLNRSQLLQVLVNSPVAQTMLYSQGFCVFSLEQLSLLRKLSDRRHHHHNHVSSKAIFN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3014g00002 237 SMART finulus 104 153 IPR011598 GO:0046983
Vium3014g00002 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 157 IPR036638 GO:0046983
Vium3014g00002 237 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 89 218 IPR045843 GO:0003700|GO:0006355
Vium3014g00002 237 Gene3D - 102 165 IPR036638 GO:0046983
Vium3014g00002 237 MobiDBLite consensus disorder prediction 80 113 - -
Vium3014g00002 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 147 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3014g00002 Vium-Chr3014 16629 17605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3014g00002 76 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 36.842 4.50e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3014g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3014g00002 - - aprc:113855910 293.893