Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3013g00002 ATGGCGAATTTGCCACAATCAATCTCAATTAGTGGTGCGTCCTTTGGAGCTTCTTCTGTCTCTGCAACGAAGGATCGAAGAATGGCGTCTGTGGAACATCTCGTCCTCGAACTCAGCAATCCTGATCTCCGAGAAAACGCACTCCATGAACTCTCCAAGAAGAGAGAGTTATTTCAGGATCTTGCTCCATTACTGTGGAATTCTTTTGGTACTATGGCAGCACTTTTGCAGGAAATAGTTTCAATATACCCTGTTATTTCCCCGCCAAACCTTACTCCAGCACAATCAAACCGAGTCTGCAATGCTCTTGCCCTTCTTCAGTGTGTGGCGTCTCACCTTGATACAAGGATGCAATTCCTCAACGCTCATATACCTCTTTATCTGTATCCCTTCCTTAATACAACAAGTAAGTCCAGGCCATTTGAGTATTTGAGGCTAACCAGTCTAGGAGTCATTGGTGCCTTGGTAAAGGTTGATGATACAGAAGTTATAAGTTTTCTTCTTTCAACAGAGATTATTCCGCTGTGCTTGCGCAGTATGGAAATGGGCAGTGAATTATCAAAAACGGTTGCAACCTTTATAGTCCAAAAAATTCTGCTGGACGAAATTGGTTTGAAATATATTTGCACTACAGCAGAACGCTTTTATGCAGTAGGTCGAGTTTTGGGAAACATGGTGGCAACTCTTGTTGAGCAACCGTCATGCCGTCTTTTGAAGCATATTATTCGTTGCTATCTTCGCCTGTCAGATAACCAGAGTGCTTGCGAGGCTTTAAGAACCTGTCTCCCAGACATGTTAAGAGACGCTACATTCAGTAGTTGCCTTCGTGAGGACCCAACAGCAAGGCGGTGGCTACAGCAGTTGCTTCACAATATCGGAGTCAATCGAGTTCCTACACTTCAAGGTGGAGGAGGATTTGATCATATGATGGTGTCATGA 939 0.4398 MANLPQSISISGASFGASSVSATKDRRMASVEHLVLELSNPDLRENALHELSKKRELFQDLAPLLWNSFGTMAALLQEIVSIYPVISPPNLTPAQSNRVCNALALLQCVASHLDTRMQFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRSMEMGSELSKTVATFIVQKILLDEIGLKYICTTAERFYAVGRVLGNMVATLVEQPSCRLLKHIIRCYLRLSDNQSACEALRTCLPDMLRDATFSSCLREDPTARRWLQQLLHNIGVNRVPTLQGGGGFDHMMVS 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3013g00002 312 FunFam Cell differentiation protein RCD1 24 295 - -
Vium3013g00002 312 Pfam Cell differentiation family, Rcd1-like 34 292 - -
Vium3013g00002 312 Gene3D - 23 293 IPR011989 -
Vium3013g00002 312 PANTHER UNCHARACTERIZED 24 295 IPR007216 GO:0006402|GO:0030014
Vium3013g00002 312 SUPERFAMILY ARM repeat 36 273 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3013g00002 Vium-Chr3013 5128 12265 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vium3013g00002 Rcd1 2e-128 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3013g00002 K12606 - gmx:100801266 568.54