Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3013g00001 ATGAAATCTCCTTTACTACAGGTTGCAACCTTTATAGTCCAAAAAATTCTGCTGGACGAAATTGGTTTGAAATATATTTGCACTACAGCAGAACGCTTTTATGCAGTAGGTCGAGTTTTGGGAAACATGGTGGCAACTCTTGTTGAGCAACCGTCATGCCGTCTTTTGAAGCATATTATTCGTTGCTATCTTCGCCTGTCAGATAACCAGAGTGCTTGCGAGGCTTTAAGAACCTGTCTCCCAGACATGTTAAGAGACGCTACATTCAGTAGTTGCCTTCGTGAGGACCCAACAGCAAGGCGGTGGCTACAGCAGTTGCTTCACAATATCGGAGTCAATCGAGTTCCTACACTTCAAGGTGGAGGAGGATTTGATCATATGATGGTATCGTGA 393 0.4402 MKSPLLQVATFIVQKILLDEIGLKYICTTAERFYAVGRVLGNMVATLVEQPSCRLLKHIIRCYLRLSDNQSACEALRTCLPDMLRDATFSSCLREDPTARRWLQQLLHNIGVNRVPTLQGGGGFDHMMVS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3013g00001 130 Pfam Cell differentiation family, Rcd1-like 8 110 - -
Vium3013g00001 130 Gene3D - 3 114 IPR011989 -
Vium3013g00001 130 PANTHER UNCHARACTERIZED 7 113 IPR007216 GO:0006402|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3013g00001 Vium-Chr3013 1104 2105 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Vium3013g00001 Rcd1 4.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3013g00001 K12606 - vum:124832825 265.388