Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3011g00005 ATGGAAGACCGAGCGCAAGATGCACTATTCCCTGGTTGCCGGTTCTACCCGTCCGAAGAGGTTCTACTCGGCTACTACTTAACCAAGAAGAACGAGAACCGGGAGCAGAGGTTCAACGGTTCTGATTTGATCAAGGAACTGAACCTGTACGATCATGACCCCTTTGAATTACCGGACGCTGCTTGCTTCCCGTACGGTTACCGAGGGAGGAAGAAGCATTGGTTCTGTTACACCGTTAAAGAGACCAAAAGCCCAAGCAGAAAGGTCAAAAGCGGGTTCTGGCTCCGGAAGGGAAGGGTTCGAGATATTCGCGATAACGGTGGGATTGGGAACGCTGTTTTAGGCACCAGGTCCCGTTTCGTTTTCTACGTTGGGAATTCGCTGAAAAAAGCTACCAGAACGGATTGGATTTTGTACGAGTACGCATTGGTTGACCAAATTCTGTCTTCGTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCATCATAAGAATAGTCCATCTGAAATTGGTCGCAGTTGTTGTGCTGAAGAGAGTGCAGCTGTGGTGGTGCGACACATCGGTGTTCAACATGATGGATGTGTTGGAGGTGATGACGTTTGTGATGATGGATTTGTTAATAGAGAGATTGAGGCCGCTGAGAATCCAATTAGGCGTGGTGGTGAACAAGATCATGCTGCAACTGTTTCAGTTGCTCAGGGAAGTCAGCCGGTTCAGGAAAGGCTTTCTGGACTTCCCTGTGACGGTGCATTGTACATTGAAGCTGTGATACCTCAGCAACACATGCTTTCCATTCTAGAGGAGGATTTCATAGAATTGAATGATATTGTATGA 831 0.4753 MEDRAQDALFPGCRFYPSEEVLLGYYLTKKNENREQRFNGSDLIKELNLYDHDPFELPDAACFPYGYRGRKKHWFCYTVKETKSPSRKVKSGFWLRKGRVRDIRDNGGIGNAVLGTRSRFVFYVGNSLKKATRTDWILYEYALVDQILSSFVLCRVVNKPHHKNSPSEIGRSCCAEESAAVVVRHIGVQHDGCVGGDDVCDDGFVNREIEAAENPIRRGGEQDHAATVSVAQGSQPVQERLSGLPCDGALYIEAVIPQQHMLSILEEDFIELNDIV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3011g00005 276 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Vium3011g00005 276 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
Vium3011g00005 276 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Vium3011g00005 276 Pfam No apical meristem (NAM) protein 11 143 IPR003441 GO:0003677|GO:0006355
Vium3011g00005 276 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 10 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3011g00005 Vium-Chr3011 25298 31487 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3011g00005 9 186 NAC Transcription Factor Family AT1G32510 31.959 2.69e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium3011g00005 NAM 7.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3011g00005 - - gmx:100790503 384.415