Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3011g00003 ATGGCGCAGATTCAGGCACAGCAGCATCAAGGTCCAGTTTCGGCTCCGCCAAACGGCGTCGCACCGGCGCCGAACGCGAACCAGTTTGTGACTACGTCGCTGTACGTAGGCGATCTTGAACAGAATGTCAACGACTCGCAACTCTATGATCTGTTCAGTCAGGTCGGACAGGTCGTTTCGGTTCGTGTCTGCAGGGACTTGACCACGCGTCGTTCACTCGGCTATGGCTATGTCAATTACAGTAACCCTACCGATGCGGCGAGGGCATTGGATGTGCTGAATTTCACTCCCCTGAACAGCAAATCGATTAGGATCATGTATTCTCATCGGGATCCTAGTATTCGGAAGAGTGGTACTGCGAATATTTTTATCAAGAATTTGGATAAGGCTATTGACCACAAGGCCTTACATGATACTTTTTCTTCTTTTGGACACATTCTTTCTTGCAAAATAGCAACTGATGGGTCTGGCCTGTCTAAAGGTTATGGTTTTGTTCAATTTGACAATGAAGAGTCTGCACAGAATGCTATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTAGGTCCTTTCCTGCGAAAGCAAGATAGAGAGAATGCTCTCAGTAAGACAAAATTCAATAATGTCTATGTGAAAAACCTATCAGATTCAACCACAGATGAAGAGTTGAAGAAAATTTTTGGAGAACATGGTATCATTACTAGTGCTGTAGTAATGAGAGATGCGGATGGTAAATCTAAGTGTTTTGGTTTCGTCAATTTTGAAAACCCAGACGATGCTGCCAAAGCTGTTGAGGGGCTTAATGGGAAGAAATTTGATGAGAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAGCGTGAACTTGAATTGAAAGGAAGGTTTGAGCAGAGTATCAAGGAAGCTGCTGACAAATTTCAGGGTGTGAACTTGTATCTCAAGAACTTGGATGATACTCTTAGTGATGAAAATCTTAAAGAAATGTTTTCTGAGTTTGGTACAATAACTTCATACAAGGTAATGCGAGACCCGAATGGAATTAGTAGAGGATCTGGATTTGTTGCATTTTCAACTCCTGAAGAAGCATCTCGGGCTCTTGCTGAGATGAATGGTAAAATGATTGCTGGAAAGCCTCTCTACGTTGCCCTGGCACAGAGAAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAGTTTTCACAGATGAGGCCTGTTGCAATTTCGCCATCTGTTGGACCTCGAATGCCTCTCTATCCTCCTGGTGCTCCTGGACTAGGACAACAATTTTTGTATGGTCAAGGACCACCAGCCATGATTCCTCCCCAAGCTGGATTTGGTTACCAACAGCAGCTAGTTCCTGGAATGAGGCCTGGTGGCGGTCCTATGCCTAGCTTCTTTGTTCCTCTGGTTCAGCAGGGGCAGCAAGGACAGCGCCCAGGTGGACGCCGAGGAGCTGGTCCTGTGCAACAACCTCAACAGCCAGTGCCAATGATGCAGCAGCAGATGCTTCCAAGGGGACGAGTCTATCGTTACCCTCCTGGCCGCAACATGCAAGATGTCCCACTTCCAGGTGTAGCTGGTGGGATGATGTCTGTCCCGTATGACATGGGTGGTCTGCCAATCCGTGATGCTGTGGGACAGCCAATGCCTATTCAAGCTCTGGCTACGGCCCTTGCAAATGCCCCACCTGAGCAGCAGAGGACTATGCTGGGTGAAGCTTTATACCCGCTGGTGGATCAGCTGGAACATGATGCAGCAGCAAAGGTTACTGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGCTACATCTGATCGAGTCACCGGATGCTCTGAAGGCGAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTGCTCAGCAGCAAACCAACCCTGCTGATCAACTAGCTTCACTCTCTCTCAATGACAATCTTGTCCCTTAG 1956 0.4703 MAQIQAQQHQGPVSAPPNGVAPAPNANQFVTTSLYVGDLEQNVNDSQLYDLFSQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPTDAARALDVLNFTPLNSKSIRIMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDGSGLSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGPFLRKQDRENALSKTKFNNVYVKNLSDSTTDEELKKIFGEHGIITSAVVMRDADGKSKCFGFVNFENPDDAAKAVEGLNGKKFDEKEWYVGKAQKKSERELELKGRFEQSIKEAADKFQGVNLYLKNLDDTLSDENLKEMFSEFGTITSYKVMRDPNGISRGSGFVAFSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAISPSVGPRMPLYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGGPMPSFFVPLVQQGQQGQRPGGRRGAGPVQQPQQPVPMMQQQMLPRGRVYRYPPGRNMQDVPLPGVAGGMMSVPYDMGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3011g00003 651 SMART rrm1_1 315 387 IPR000504 GO:0003723
Vium3011g00003 651 SMART rrm1_1 121 193 IPR000504 GO:0003723
Vium3011g00003 651 SMART rrm1_1 33 106 IPR000504 GO:0003723
Vium3011g00003 651 SMART rrm1_1 212 284 IPR000504 GO:0003723
Vium3011g00003 651 SUPERFAMILY PABC (PABP) domain 496 642 IPR036053 GO:0003723
Vium3011g00003 651 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Vium3011g00003 651 FunFam Polyadenylate-binding protein 19 120 - -
Vium3011g00003 651 MobiDBLite consensus disorder prediction 476 498 - -
Vium3011g00003 651 Gene3D - 120 193 IPR012677 -
Vium3011g00003 651 SMART rrm2_1 33 106 IPR003954 GO:0003676
Vium3011g00003 651 SMART rrm2_1 315 387 IPR003954 GO:0003676
Vium3011g00003 651 SMART rrm2_1 212 284 IPR003954 GO:0003676
Vium3011g00003 651 SMART rrm2_1 121 193 IPR003954 GO:0003676
Vium3011g00003 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723
Vium3011g00003 651 PANTHER RNA BINDING PROTEIN 31 94 - -
Vium3011g00003 651 SUPERFAMILY RNA-binding domain, RBD 211 395 IPR035979 GO:0003676
Vium3011g00003 651 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 33 627 IPR006515 GO:0003723
Vium3011g00003 651 FunFam Polyadenylate-binding protein 121 194 - -
Vium3011g00003 651 Gene3D - 550 633 - -
Vium3011g00003 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Vium3011g00003 651 FunFam Polyadenylate-binding protein 550 632 - -
Vium3011g00003 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Vium3011g00003 651 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676
Vium3011g00003 651 FunFam Polyadenylate-binding protein 201 296 - -
Vium3011g00003 651 MobiDBLite consensus disorder prediction 1 22 - -
Vium3011g00003 651 CDD RRM3_I_PABPs 210 289 - -
Vium3011g00003 651 Gene3D - 1 119 IPR012677 -
Vium3011g00003 651 Gene3D - 196 301 IPR012677 -
Vium3011g00003 651 Gene3D - 302 404 IPR012677 -
Vium3011g00003 651 CDD RRM4_I_PABPs 313 391 - -
Vium3011g00003 651 CDD RRM2_I_PABPs 118 194 IPR045305 -
Vium3011g00003 651 FunFam Polyadenylate-binding protein 297 402 - -
Vium3011g00003 651 CDD RRM1_I_PABPs 33 112 IPR034364 -
Vium3011g00003 651 SMART poly_2 566 629 IPR002004 GO:0003723
Vium3011g00003 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Vium3011g00003 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 384 IPR000504 GO:0003723
Vium3011g00003 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Vium3011g00003 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Vium3011g00003 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Vium3011g00003 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3011g00003 Vium-Chr3011 15638 20265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3011g00003 1 646 Eukaryotic Initiation Factors Gene Family AT4G34110 68.203 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3011g00003 K13126 - gmx:100784442 1102.43