Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium3011g00002 | ATGGTTAAGCATAACAACGTCATCCCCAGTGGACATTTCCGGAAACATTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCGAGAAAGACCAGAAGACGATTAGCTCGGCAGAAGAAGGCTGTCAAAATTTTCCCCAGGCCAACTGCTGGACCTCTCAGGCCTGTTGTTCATGGTCAGACGTTGAAATACAACATGAAAGTCAGAGCTGGAAGAGGATTTTCTCTTGAAGAATTGAAGAGTGCTGGAATTCCAAAAAAACTTGCTCCAACTATTGGTATTGCTGTTGATCATCGGCGCAAGAACCGTTCTTTGGAGGGTCTGCAGGCTAATGTTCAGAGACTCAAAACATACAAGGCCAAGTTGGTTGTTTTCCCAAGACGGGCACGAAAGGTGAAGACCGGTGATTCTAGTGCTGAGGAACTAGCAAATGCTACCCAGGTTCAGGGTCCATTCTTGCCCATTGCGAGGGAGAAGCCTACTGTTGACCTTGTTAAGGTAACAGATGAAATGAAGGCGTTCAAAGCTTACTATAAGCTTCGTCTTGAACGCACCAACCAACGTCACTATGGTGCCCGTTTAAAGAAAGCTGCTGAAGCAGAGAAGGAAGACAAGAAATAG | 624 | 0.4551 | MVKHNNVIPSGHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKTGDSSAEELANATQVQGPFLPIAREKPTVDLVKVTDEMKAFKAYYKLRLERTNQRHYGARLKKAAEAEKEDKK | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium3011g00002 | 207 | Hamap | 50S ribosomal protein L13e [rpl13e]. | 45 | 128 | IPR001380 | GO:0003735|GO:0005840|GO:0006412 | |
| Vium3011g00002 | 207 | Gene3D | - | 167 | 207 | - | - | |
| Vium3011g00002 | 207 | FunFam | 60S ribosomal protein L13 | 166 | 207 | - | - | |
| Vium3011g00002 | 207 | ProSitePatterns | Ribosomal protein L13e signature. | 70 | 84 | IPR018256 | GO:0003735|GO:0005840|GO:0006412 | |
| Vium3011g00002 | 207 | PANTHER | 60S RIBOSOMAL PROTEIN L13 | 1 | 207 | IPR001380 | GO:0003735|GO:0005840|GO:0006412 | |
| Vium3011g00002 | 207 | Pfam | Ribosomal protein L13e | 7 | 185 | IPR001380 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium3011g00002 | Vium-Chr3011 | 9523 | 11527 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium3011g00002 | 2 | 192 | Cytoplasmic Ribosomal Protein Gene Family | AT3G49010 | 85.340 | 4.57e-124 | 347 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium3011g00002 | K02873 | - | gmx:100782333 | 373.629 |