Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3011g00001 ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTCGGCTGCAAACGCTTACGACCCCTTGCCCCCAAGCTTTCCAACACTGACTCCACTACCTCCATCACTTCACCTCCTGTCACAACTTTCGACCTCAAGAGCTTCATCAAACCAGAAAGTGCTTCCAGAAAACTTGGATCCTCTCATGACAATAAGAGAGACCCTTCTTCACCTCAGGGCCAGGTGGAAACGCATATTCCAGGAGGGACGCGGTGGAATCCGACGCAGGAACAGATAGGGATACTGGAGATGCTGTATAGAGGAGGGATGCGAACACCGAATGCTCAACAGATAGAGCAGATCACAGTCCAACTAAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTCGGCCTTGCTCATAGTCCTCGTACTCCCACCACCCTAGTGTCACCTTCCTTCAGTTGTAGTGTAATAACCTCTTTGGACACGACAAAACGGGGGGAGGTGGTGGAAAGAGACGAAGAAGATAGCCCTTTGAAGAAGTGTAGGAGCTGGGCATTTGAGTACTTGGAAGACCAAAGTTGGTCATCATGGAAAGAGGAGGAACACAGAACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA 705 0.5106 MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDSTTSITSPPVTTFDLKSFIKPESASRKLGSSHDNKRDPSSPQGQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTLVSPSFSCSVITSLDTTKRGEVVERDEEDSPLKKCRSWAFEYLEDQSWSSWKEEEHRTLELFPLHPEGR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3011g00001 234 MobiDBLite consensus disorder prediction 58 92 - -
Vium3011g00001 234 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677
Vium3011g00001 234 Pfam Homeodomain 88 147 IPR001356 GO:0003677
Vium3011g00001 234 MobiDBLite consensus disorder prediction 70 92 - -
Vium3011g00001 234 Gene3D - 87 154 - -
Vium3011g00001 234 SUPERFAMILY Homeodomain-like 87 151 IPR009057 -
Vium3011g00001 234 CDD homeodomain 88 149 IPR001356 GO:0003677
Vium3011g00001 234 FunFam WUSCHEL-related homeobox 4 87 154 - -
Vium3011g00001 234 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 234 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vium3011g00001 234 SMART HOX_1 85 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3011g00001 Vium-Chr3011 1776 3297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3011g00001 1 178 Wox Gene Family AT1G46480 61.170 1.57e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium3011g00001 Homeodomain 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3011g00001 - - gmx:100500674 401.749