Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3010g00002 ATGGAGGGAGCAGGCAGTGGGAGCGGAGAAGTGTCGACGGCGGGGCCGACACCGATTCCGAACGCTAACGCGCCGCCGCCTTTCCTGAGCAAGACGTATGACATGGTGGACGACCCTTCGACGGACTCAATTGTGTCGTGGAGTCCAACGAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCCAAACACTTCAAGCACAATAACTTCTTCCAGCTTCGTTCGCCAGGTTTTAGAAAGGTAGACCCGGATCGCTGGGAGTTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACCATATCTCGGCGGAAACCTGCCCATGATCATAATCATCAACAAGCACAACAAGTACACGGACAGAATTCATCGGTTGGGGCTTGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAAATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAGCAATCTACTGATAACCAGCTGCAGACTATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGATAGTAATAGACGCATAACAGAGGCAAATAAAAAACGTCGACTGAAGCAGGAAGGTATTGGTGAAATGGAACATACAGCTGCTTCTGATGGGCAAATTGTTAAATATCAACCTCTGATAAATGAAGCAGCAAAAGCAATGGTAAGGCAAATAATGAAATTGGATGCTTCTCGACAAGAATCTTTCAGTAATAACCCCGATAATTATTTGATTGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGAGTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAGGTGCAGTCTTCTTATGTTCCATCTGCAGCAAGGACTCAAGGGCACGGTCCTTCAACAGGAAAATCTGAAATTCTATCTTCTTCCCAAGTTGCAGCCTGTGAAGAAGTTACATATCCTAATCTAAATGTTTCAGTTGGGGAACCTAATGCACCTGCTATCCCTGTTACTCAAACAGATGAAATAATGCCGGACCTTGCTACAATACCAGATATAGTAGCAGAAAACATTCTCAATATTCCTCAAGAAAATTATATGGCACCAGAAACTGGTGGTGACGGATACATGGATCCTACTTCATTTGGGGTGAATATGTCACTACCCCTTGATTTTGATAGTATTTCAACTGAACCAGACATCGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTGTCAGAGGATATTGAAACGAATGGTACTGAAGTATTCTATGAGAATGAGTTGCAGCCAACTGAAAATGGATGGGAAAAATCTCAACATATGGACCTACTTACTGAACAGATGGGCTTACTTTCTTCTGATGCAAAAAAAAATTGA 1509 0.4387 MEGAGSGSGEVSTAGPTPIPNANAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFFQLRSPGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHDHNHQQAQQVHGQNSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNDSNRRITEANKKRRLKQEGIGEMEHTAASDGQIVKYQPLINEAAKAMVRQIMKLDASRQESFSNNPDNYLIGDHSSPSSEMDRGNSLSRSSGVTLQEVPPTKVQSSYVPSAARTQGHGPSTGKSEILSSSQVAACEEVTYPNLNVSVGEPNAPAIPVTQTDEIMPDLATIPDIVAENILNIPQENYMAPETGGDGYMDPTSFGVNMSLPLDFDSISTEPDIDDLLNNPHFWDDIVRTPVSEDIETNGTEVFYENELQPTENGWEKSQHMDLLTEQMGLLSSDAKKN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3010g00002 502 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 301 IPR027725 -
Vium3010g00002 502 MobiDBLite consensus disorder prediction 1 26 - -
Vium3010g00002 502 Coils Coil 142 169 - -
Vium3010g00002 502 MobiDBLite consensus disorder prediction 275 344 - -
Vium3010g00002 502 SUPERFAMILY "Winged helix" DNA-binding domain 23 113 IPR036390 -
Vium3010g00002 502 Gene3D - 21 114 IPR036388 -
Vium3010g00002 502 SMART hsfneu3 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium3010g00002 502 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium3010g00002 502 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium3010g00002 502 FunFam Heat stress transcription factor B-4 20 114 - -
Vium3010g00002 502 Pfam HSF-type DNA-binding 28 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3010g00002 Vium-Chr3010 21595 26689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3010g00002 7 496 HSF AT1G32330 52.259 6.10e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium3010g00002 HSF_DNA-bind 1.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3010g00002 K09419 - gmx:732544 798.505