Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3010g00001 ATGAGCTTTCAGGACATCGAGGCTGGTCGGCCCTTCGGTTCCAGGCGTGGCTTGACCAACGGCAAGCAGGACCCCACGCAGGCAGTGGCTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGATACCCCCGAGCTCCGTGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATGCAAGCAAGAAGATCGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTATTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAAAGGGAAACAGCATACACTCCTTTTGTTCCCCAAGCAGTCCTTCCTTCCAGCTATACTGCTGGTGAATTAGGTGTTGGTTCTGATAAATCACCAGAAGAGCGTGCCTTACTCGTGGAATCAAGGAGGCAGGAGGTTTTGTTCTTAGATAATGAGATTGCTTTTAACGAGGCCATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAACGAGATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTTTAAAAGCTTCAAAGACCCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTTGGGATTGTGCTTCTGATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4635 MSFQDIEAGRPFGSRRGLTNGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGELGVGSDKSPEERALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLLKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3010g00001 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium3010g00001 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Vium3010g00001 273 CDD SNARE_Qa 200 241 - -
Vium3010g00001 273 SMART tSNARE_6 175 242 IPR000727 -
Vium3010g00001 273 Pfam SNARE domain 216 268 IPR000727 -
Vium3010g00001 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Vium3010g00001 273 CDD SynN 23 147 IPR006011 GO:0016020
Vium3010g00001 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Vium3010g00001 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Vium3010g00001 273 FunFam Syntaxin-22 like 20 133 - -
Vium3010g00001 273 Gene3D - 19 133 - -
Vium3010g00001 273 MobiDBLite consensus disorder prediction 1 23 - -
Vium3010g00001 273 Gene3D - 174 273 - -
Vium3010g00001 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Vium3010g00001 273 FunFam Syntaxin-22 like 173 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3010g00001 Vium-Chr3010 5129 9184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3010g00001 1 261 SNARE and Associated Proteins AT5G46860 78.544 1.43e-149 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3010g00001 - - gmx:547656 435.261