Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00021 ATGGAGTTTGCTAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGCTCACTCTATAGCTTCAGCAACCCCACCACCTGACTCTAAACCTTCCATCACCTCTCATCAATCATGGATCCCAAGCAACATATACAATGGTTGTAACAGTGGCTTTCTAACTGAGAGCTTTACAAATTCAAGAGAAGTACAGCACAAGCACGCCATGACTGACTCACTTAGAATTTCAACAAGGCAAGCCTTGGGTTTCCACAATGGAAAAAGCGTTGCTCAACAGCCAGTTAGTGATCTCTTTGCAGCAAGAATCAAAGGTGAAATGATGAACACCTCCATGAAGGCTATGGAGGAATCGTGTTCACTAATCCCAATTCATGAACCACGATATCCTCCTAGTTTATTACCTAGTCTTGGTGTAACTGGTGTAGAGTTTTTTCCTTCGGAGACTGTCTTTCATAATGAGAAGCCTATTGATGGAAAGACCTTAAGCAAGAGATATAACAACTTTGGTGATGCTAGTTTAATTTCGAATTTACCAACCCTAGATATGACCTCTTCTTTGGTTTCATGTTCTTTGGGTTTAAATCCTAAAATGTTTGATTTGCATACAAGTTACAGTGAGAGTTGTGAAATCCAACCTTGCTATGATACTTTTGGTCTAAACGAGAGCATAGCTTTGTGCCACAGCGACATGCATGGCCGCGAAAATAGTCCATCAAATAGCTCAAAAATTTCATCATTTATAAGTGAAGTTGCAACGGTAAAAAGGCCTAGTAGTTGCTCTCTACCAAAAGATTCAGAGGCCAAAGCTAAGAGGTCGAGGCCATCATCATGCCCTCCCCTGAAGATAAGAAAGGAAAAATTGGGGGATAGGATTCAAACTCTTCAAAGATTAGTAGCACCTTTCGGGAAGACCAGTACAGCCTCTGTGTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCACGCAAAGCAATAGAATGTTGCAGCTGAGTACAAATAAAGTAGATAAAGAAGTGAAGCCAGACCTAAGAAGCAGAGGCTTGTGTCTTGTTCCCCTTTCTTACGCATCGTTTATTCATCGTTGTGTTTAG 1131 0.4103 MEFASFHLQHQLQEESAHSIASATPPPDSKPSITSHQSWIPSNIYNGCNSGFLTESFTNSREVQHKHAMTDSLRISTRQALGFHNGKSVAQQPVSDLFAARIKGEMMNTSMKAMEESCSLIPIHEPRYPPSLLPSLGVTGVEFFPSETVFHNEKPIDGKTLSKRYNNFGDASLISNLPTLDMTSSLVSCSLGLNPKMFDLHTSYSESCEIQPCYDTFGLNESIALCHSDMHGRENSPSNSSKISSFISEVATVKRPSSCSLPKDSEAKAKRSRPSSCPPLKIRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSTQSNRMLQLSTNKVDKEVKPDLRSRGLCLVPLSYASFIHRCV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00021 376 MobiDBLite consensus disorder prediction 257 281 - -
Vium3009g00021 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 336 IPR036638 GO:0046983
Vium3009g00021 376 MobiDBLite consensus disorder prediction 14 36 - -
Vium3009g00021 376 Gene3D - 281 352 IPR036638 GO:0046983
Vium3009g00021 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Vium3009g00021 376 CDD bHLH_AtbHLH_like 283 328 IPR045239 -
Vium3009g00021 376 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 124 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00021 Vium-Chr3009 84496 88027 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00021 236 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 50.000 9.02e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00021 - - vum:124832810 738.799