Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00020 ATGGAGTTTGCTAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGCTCACTCTATAGCTTCAGCAACCCCACCACCTGACTCTAAACCTTCCATCACCTCTCATCAATCATGGATCCCAAGCAACATATACAATGGTTGTAACAGTGGCTTTCTAACTGAGAGCTTTACAAATTCAAGAGAAGTACAGCACAAGCACGCCATGACTGACTCACTTAGAATTTCAACAAGGCAAGCCTTGGGTTTCCACAATGGAAAAAGCGTTGCTCAACAGCCAGTTAGTGATCTCTTTGCAGCAAGAATCAAAGGTGAAATGATGAACACCTCCATGAAGGCTATGGAGGAATCGTGTTCACTAATCCCAATTCATGAACCACGATATCCTCCTAGTTTATTACCTAGTCTTGGTGTAACTGGTGTAGAGTTTTTTCCTTCGGAGACTGTCTTTCATAATGAGAAGCCTATTGATGGAAAGACCTTAAGCAAGAGATATAACAACTTTGGTGATGCTAGTTTAATTTCGAATTTACCAACCCTAGATATGACCTCTTCTTTGGTTTCATGTTCTTTGGGTTTAAATCCTAAAATGTTTGATTTGCATACAAGTTACAGTGAGAGTTGTGAAATCCAACCTTGCTATGATACTTTTGGTCTAAACGAGAGCATAGCTTTGTGCCACAGCGACATGCATGGCCGCGAAAATAGTCCATCAAATAGCTCAAAAATTTCATCATTTATAAGTGAAGTTGCAACGGTAAAAAGGCCTAGTAGTTGCTCTCTACCAAAAGATTCAGAGGCCAAAGCTAAGAGGTCGAGGCCATCATCATGCCCTCCCCTGAAGCAGATAAGAAAGGAAAAATTGGGGGATAGGATTCAAACTCTTCAAAGATTAGTAGCACCTTTCGGGAAGACCAGTACAGCCTCTGTGTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCACGCAAAGCAATAGAATGTTGCAGCTGAGTACAAATAAAGTAGATAAAGAAGTGAAGCCAGACCTAAGAAGCAGAGGCTTGTGTCTTGTTCCCCTTTCTTACGCATCGTTTATTCATCGTTGTGTTTAG 1134 0.4109 MEFASFHLQHQLQEESAHSIASATPPPDSKPSITSHQSWIPSNIYNGCNSGFLTESFTNSREVQHKHAMTDSLRISTRQALGFHNGKSVAQQPVSDLFAARIKGEMMNTSMKAMEESCSLIPIHEPRYPPSLLPSLGVTGVEFFPSETVFHNEKPIDGKTLSKRYNNFGDASLISNLPTLDMTSSLVSCSLGLNPKMFDLHTSYSESCEIQPCYDTFGLNESIALCHSDMHGRENSPSNSSKISSFISEVATVKRPSSCSLPKDSEAKAKRSRPSSCPPLKQIRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSTQSNRMLQLSTNKVDKEVKPDLRSRGLCLVPLSYASFIHRCV 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00020 377 MobiDBLite consensus disorder prediction 14 36 - -
Vium3009g00020 377 MobiDBLite consensus disorder prediction 257 280 - -
Vium3009g00020 377 CDD bHLH_AtbHLH_like 284 329 IPR045239 -
Vium3009g00020 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Vium3009g00020 377 SMART finulus 278 327 IPR011598 GO:0046983
Vium3009g00020 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 337 IPR036638 GO:0046983
Vium3009g00020 377 Gene3D - 279 350 IPR036638 GO:0046983
Vium3009g00020 377 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 126 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00020 Vium-Chr3009 84496 88028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00020 236 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 49.655 4.27e-31 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00020 - - vum:124832810 745.347