Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00012 ATGTCAGCGGAAGCGTCTAAGCGCCACCAATGGCAGTGGGAGAACGCCACTGCCGGCGCCGCTGCTGGATTCGCCACCGTCGCTGTTATGCACCCCCTTGATGTTGTTCGAACTAGGTTCCAAGTTAACGACGGTCGAGTCTCGCATCTTCCCAGTTACAAGAACACTGCACACGCCGTTTTCACCATTGCTCGCTCCGAGGGATTAAGAGGCTTATATGCAGGCTTTCTTCCGGGGGTTCTTGGGTCTACCATTTCGTGGGGTTTATATTTCTTTTTTTATGACAAAGCCAAACAAAGATATGCAAGGAACAGGGAGGGGAAGTTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTCCTTGTGCACAAATCCTGTCTGGCTAGTAAAAACGAGATTGCAGCTTCAAACTCCACTTCATCAGACACGTCCATACTCTGGGATTTATGATGCCTTTAAGACCATACTGAGGGAAGAAGGATTTAGAGCATTTTACAAAGGGATTGTTCCCAGCCTGTTTCTGGTTTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAACTACGTAAAGTTATTGTTGATTTTAAGAGTGAGAGAAGTACAGTACATAATCAAAACCCAGATAAATTGCTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTTGCTGCGATACTGCTAACTTATCCATTTCAGGTTATGCGAGCCCGATTGCAGCAACGGCCTAGTGGTGATGGTGTTCCAAGATATATGGACACTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTATCCGAGGTTATTACAGAGGAATTACGGCAAACCTGTTGAAGAACGCTCCTGCTTCTTCAATAACATTTATTGTGTATGAAAACGTTCTAAAATTGCTTAAACCGACTACAAGGAATGACTGA 945 0.4497 MSAEASKRHQWQWENATAGAAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREGKLSPGLHLASAAEAGGLVSLCTNPVWLVKTRLQLQTPLHQTRPYSGIYDAFKTILREEGFRAFYKGIVPSLFLVSHGAIQFTAYEELRKVIVDFKSERSTVHNQNPDKLLNSVDYAVLGATSKLAAILLTYPFQVMRARLQQRPSGDGVPRYMDTWHVVKETARFEGIRGYYRGITANLLKNAPASSITFIVYENVLKLLKPTTRND 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00012 314 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Vium3009g00012 314 SUPERFAMILY Mitochondrial carrier 12 302 IPR023395 -
Vium3009g00012 314 Gene3D Mitochondrial carrier domain 1 105 IPR023395 -
Vium3009g00012 314 Gene3D Mitochondrial carrier domain 106 310 IPR023395 -
Vium3009g00012 314 FunFam Folate transporter 1, chloroplastic 106 312 - -
Vium3009g00012 314 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Vium3009g00012 314 Pfam Mitochondrial carrier protein 109 199 IPR018108 -
Vium3009g00012 314 Pfam Mitochondrial carrier protein 220 308 IPR018108 -
Vium3009g00012 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 217 306 IPR018108 -
Vium3009g00012 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Vium3009g00012 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vium3009g00012 314 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 309 IPR044712 GO:0006862|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00012 Vium-Chr3009 20927 28467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00012 32 314 Chloroplast and Mitochondria Gene Families AT1G25380 36.519 5.31e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00012 K15115 - gmx:100809599 573.163