Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00010 ATGTCAGCGGAAGCGTCTAAGCGCCACCAATGGCAGTGGGAGAACGCCACTGCCGGCGCCGCTGCTGGATTCGCCACCGTCGCTGTTATGCACCCCCTTGATGTTGTTCGAACTAGGTTCCAAGTTAACGACGGTCGAGTCTCGCATCTTCCCAGTTACAAGAACACTGCACACGCCGTTTTCACCATTGCTCGCTCCGAGGGATTAAGAGGCTTATATGCAGGCTTTCTTCCGGGGGTTCTTGGGTCTACCATTTCGTGGGGTTTATATTTCTTTTTTTATGACAAAGCCAAACAAAGATATGCAAGGAACAGGGAGGGGAAGTTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTCCTTGTGCACAAATCCTGTCTGGCTAGTAAAAACGAGATTGCAGCTTCAAACTCCACTTCATCAGACACGTCCATACTCTGGGATTTATGATGCCTTTAAGACCATACTGAGGGAAGAAGGATTTAGAGCATTTTACAAAGGGATTGTTCCCAGCCTGTTTCTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTTGCTGCGATACTGCTAACTTATCCATTTCAGGTTATGCGAGCCCGATTGCAGCAACGGCCTAGTGGTGATGGTGTTCCAAGATATATGGACACTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTATCCGAGGTTATTACAGAGGAATTACGGCAAACCTGTTGAAGAACGCTCCTGCTTCTTCAATAACATTTATTGTGTATGAAAACGTTCTAAAATTGCTTAAACCGACTACAAGGAATGACTGA 834 0.4628 MSAEASKRHQWQWENATAGAAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREGKLSPGLHLASAAEAGGLVSLCTNPVWLVKTRLQLQTPLHQTRPYSGIYDAFKTILREEGFRAFYKGIVPSLFLNSVDYAVLGATSKLAAILLTYPFQVMRARLQQRPSGDGVPRYMDTWHVVKETARFEGIRGYYRGITANLLKNAPASSITFIVYENVLKLLKPTTRND 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00010 277 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 178 IPR018108 -
Vium3009g00010 277 ProSiteProfiles Solute carrier (Solcar) repeat profile. 180 269 IPR018108 -
Vium3009g00010 277 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Vium3009g00010 277 Pfam Mitochondrial carrier protein 109 186 IPR018108 -
Vium3009g00010 277 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Vium3009g00010 277 Pfam Mitochondrial carrier protein 183 271 IPR018108 -
Vium3009g00010 277 Gene3D Mitochondrial carrier domain 184 277 IPR023395 -
Vium3009g00010 277 Gene3D Mitochondrial carrier domain 2 183 IPR023395 -
Vium3009g00010 277 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vium3009g00010 277 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 180 IPR044712 GO:0006862|GO:0055085
Vium3009g00010 277 SUPERFAMILY Mitochondrial carrier 12 265 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00010 Vium-Chr3009 20927 28468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00010 32 270 Chloroplast and Mitochondria Gene Families AT2G47490 34.545 2.86e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00010 K15115 - gmx:100809599 486.493