Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00009 ATGTCAGCGGAAGCGTCTAAGCGCCACCAATGGCAGTGGGAGAACGCCACTGCCGGCGCCGCTGCTGGATTCGCCACCGTCGCTGTTATGCACCCCCTTGATGTTGTTCGAACTAGGTTCCAAGTTAACGACGGTCGAGTCTCGCATCTTCCCAGTTACAAGAACACTGCACACGCCGTTTTCACCATTGCTCGCTCCGAGGGATTAAGAGGCTTATATGCAGGCTTTCTTCCGGGGGTTCTTGGGTCTACCATTTCGTGGGGTTTATATTTCTTTTTTTATGACAAAGCCAAACAAAGATATGCAAGGAACAGGGAGGGGAAGTTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTCCTTGTGCACAAATCCTGTCTGGCTAGTAAAAACGAGATTGCAGCTTCAAACTCCACTTCATCAGACACGTCCATACTCTGGGATTTATGATGCCTTTAAGACCATACTGAGGGAAGAAGGATTTAGAGCATTTTACAAAGGGATTGTTCCCAGCCTGTTTCTGGTTTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAACTACGTAAAGTTATTGTTGATTTTAAGAGTGAGAGAAGTACAGTACATAATCAAAACCCAGATAAATTGCTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTTGCTGCGATACTGCTAACTTATCCATTTCAGGTACAACTGTCTGTCCCCTCTTTTAAAGTTATGCGAGCCCGATTGCAGCAACGGCCTAGTGGTGATGGTGTTCCAAGATATATGGACACTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTATCCGAGGTTATTACAGAGGAATTACGGCAAACCTGTTGAAGAACGCTCCTGCTTCTTCAATAACATTTATTGTGTATGAAAACGTTCTAAAATTGCTTAAACCGACTACAAGGAATGACTGA 972 0.4486 MSAEASKRHQWQWENATAGAAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREGKLSPGLHLASAAEAGGLVSLCTNPVWLVKTRLQLQTPLHQTRPYSGIYDAFKTILREEGFRAFYKGIVPSLFLVSHGAIQFTAYEELRKVIVDFKSERSTVHNQNPDKLLNSVDYAVLGATSKLAAILLTYPFQVQLSVPSFKVMRARLQQRPSGDGVPRYMDTWHVVKETARFEGIRGYYRGITANLLKNAPASSITFIVYENVLKLLKPTTRND 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00009 323 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Vium3009g00009 323 Pfam Mitochondrial carrier protein 109 199 IPR018108 -
Vium3009g00009 323 Pfam Mitochondrial carrier protein 220 317 IPR018108 -
Vium3009g00009 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 315 IPR018108 -
Vium3009g00009 323 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 318 IPR044712 GO:0006862|GO:0055085
Vium3009g00009 323 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Vium3009g00009 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Vium3009g00009 323 FunFam Folate transporter 1, chloroplastic 106 321 - -
Vium3009g00009 323 Gene3D Mitochondrial carrier domain 2 198 IPR023395 -
Vium3009g00009 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vium3009g00009 323 SUPERFAMILY Mitochondrial carrier 12 311 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00009 Vium-Chr3009 20927 28469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00009 32 323 Chloroplast and Mitochondria Gene Families AT1G25380 35.430 7.68e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00009 K15115 - gmx:100809599 565.459