Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00008 ATGTCAGCGGAAGCGTCTAAGCGCCACCAATGGCAGTGGGAGAACGCCACTGCCGGCGCCGCTGCTGGATTCGCCACCGTCGCTGTTATGCACCCCCTTGATGTTGTTCGAACTAGGTTCCAAGTTAACGACGGTCGAGTCTCGCATCTTCCCAGTTACAAGAACACTGCACACGCCGTTTTCACCATTGCTCGCTCCGAGGGATTAAGAGGCTTATATGCAGGCTTTCTTCCGGGGGTTCTTGGGTCTACCATTTCGTGGGGTTTATATTTCTTTTTTTATGACAAAGCCAAACAAAGATATGCAAGGAACAGGGAGGGGAAGTTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTCCTTGTGCACAAATCCTGTCTGGCTAGTAAAAACGAGATTGCAGCTTCAAACTCCACTTCATCAGACACGTCCATACTCTGGGATTTATGATGCATTTAGAACCATAATGAGGGAGGAAGGATTTAGTGCACTTTACAGAGGGATTGTTCCTGGTCTATTTCTGCTTTTCATTATGCCTCAACAGGTTTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAACTACGTAAAGTTATTGTTGATTTTAAGAGTGAGAGAAGTACAGTACATAATCAAAACCCAGATAAATTGCTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTTGCTGCGATACTGCTAACTTATCCATTTCAGGTTATGCGAGCCCGATTGCAGCAACGGCCTAGTGGTGATGGTGTTCCAAGATATATGGACACTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTATCCGAGGTTATTACAGAGGAATTACGGCAAACCTGTTGAAGAACGCTCCTGCTTCTTCAATAACATTTATTGTGTATGAAAACGTTCTAAAATTGCTTAAACCGACTACAAGGAATGACTGA 966 0.4472 MSAEASKRHQWQWENATAGAAAGFATVAVMHPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGVLGSTISWGLYFFFYDKAKQRYARNREGKLSPGLHLASAAEAGGLVSLCTNPVWLVKTRLQLQTPLHQTRPYSGIYDAFRTIMREEGFSALYRGIVPGLFLLFIMPQQVSHGAIQFTAYEELRKVIVDFKSERSTVHNQNPDKLLNSVDYAVLGATSKLAAILLTYPFQVMRARLQQRPSGDGVPRYMDTWHVVKETARFEGIRGYYRGITANLLKNAPASSITFIVYENVLKLLKPTTRND 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00008 321 FunFam Folate transporter 1, chloroplastic 106 319 - -
Vium3009g00008 321 SUPERFAMILY Mitochondrial carrier 12 309 IPR023395 -
Vium3009g00008 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 313 IPR018108 -
Vium3009g00008 321 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Vium3009g00008 321 Pfam Mitochondrial carrier protein 109 206 IPR018108 -
Vium3009g00008 321 Pfam Mitochondrial carrier protein 227 315 IPR018108 -
Vium3009g00008 321 Gene3D Mitochondrial carrier domain 99 320 IPR023395 -
Vium3009g00008 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 204 IPR018108 -
Vium3009g00008 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vium3009g00008 321 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 316 IPR044712 GO:0006862|GO:0055085
Vium3009g00008 321 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00008 Vium-Chr3009 20927 28470 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00008 32 321 Chloroplast and Mitochondria Gene Families AT1G25380 35.333 4.16e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00008 K15115 - gmx:100809599 573.163