Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00005 ATGTCAACGGAAGCGCCCAAGCGCCATAAATGGCAGTGGGAGAACGCCACCGCGGGCGCTGCCGCCGGATTCGCCACCGTTGCCGTTATGTATCCACTCGATGTTGTTCGCACTAGGTTCCAAGTTAATGATGGTCGAGTTTCTCATCTTCCCAGTTACAAGAACACTGCTCACGCCGTTTTCACCATTGCGCGCTCTGAGGGATTAAGAGGGTTATATGCAGGCTTTCTTCCTGGGACTCTCGGGTCCACTATTTCGTGGGGTTTATATTTCTTTTTCTATGATAAAGCCAAACAAAGATATGCAAGGAACGGGGAAGGGAAATTGAGCCCAGGTCTTCATCTTGCCTCAGCTGCTGAAGCAGGAGGTTTGGTTTGCCTGTGCACAAATCCTGTTTGGCTTGTAAAGACAAGATTGCAGCTTCAAAGTCCACTTCATCAGACGCGACCATACTCTGGGCTTTATGATGCATTTAGGACCATAACGAGGGAAGAGGGATTTAGTGCACTTTACAGAGGCATTGTTCCTGGTCTATTGCTGCAGGTCTCTCATGGTGCTATTCAGTTCACAGCATACGAGGAGCTCCGTAAAGTTATTATTGATTTTAAGAGTAAGAGAAGTACATTCCATAATCAAAATCCTGATAAATTGTTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTGGCTGCAATACTGCTAACCTATCCATTTCAGGTTATGCGGTCTCGCTTGCAGCAACGACCTAGTGGTGACGGGGTCCCAAGATATATGGATACTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTATCCGGGGTTTTTACAAAGGAATTACCGCCAACCTCTTGAAAAATGCTCCTGCTTCTTCAATAACATTTATTGTTTATGAAAATGTTTTAAAATTTCTTAAACCGACTATAAGGAATGACTGA 948 0.4451 MSTEAPKRHKWQWENATAGAAAGFATVAVMYPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARSEGLRGLYAGFLPGTLGSTISWGLYFFFYDKAKQRYARNGEGKLSPGLHLASAAEAGGLVCLCTNPVWLVKTRLQLQSPLHQTRPYSGLYDAFRTITREEGFSALYRGIVPGLLLQVSHGAIQFTAYEELRKVIIDFKSKRSTFHNQNPDKLLNSVDYAVLGATSKLAAILLTYPFQVMRSRLQQRPSGDGVPRYMDTWHVVKETARFEGIRGFYKGITANLLKNAPASSITFIVYENVLKFLKPTIRND 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00005 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 311 IPR044712 GO:0006862|GO:0055085
Vium3009g00005 315 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Vium3009g00005 315 Gene3D Mitochondrial carrier domain 107 309 IPR023395 -
Vium3009g00005 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 307 IPR018108 -
Vium3009g00005 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Vium3009g00005 315 SUPERFAMILY Mitochondrial carrier 11 303 IPR023395 -
Vium3009g00005 315 FunFam Folate transporter 1, chloroplastic 106 313 - -
Vium3009g00005 315 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Vium3009g00005 315 Pfam Mitochondrial carrier protein 11 103 IPR018108 -
Vium3009g00005 315 Pfam Mitochondrial carrier protein 221 309 IPR018108 -
Vium3009g00005 315 Gene3D Mitochondrial carrier domain 2 106 IPR023395 -
Vium3009g00005 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00005 Vium-Chr3009 6736 14036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00005 32 308 Chloroplast and Mitochondria Gene Families AT2G47490 37.676 2.98e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00005 K15115 - gmx:100809599 561.607