Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3009g00003 ATGTCAACGGAAGCGCCCAAGCGCCATAAATGGCAGTGGGAGAACGCCACCGCGGGCGCTGCCGCCGGATTCGCCACCGTTGCCGTTATGTATCCACTCGATGTTGTTCGCACTAGGTTCCAAGTTAATGATGGTCGAGTTTCTCATCTTCCCAGTTACAAGAACACTGCTCACGCCGTTTTCACCATTGCGCGCTCTGAGGTTTGCCTGTGCACAAATCCTGTTTGGCTTGTAAAGACAAGATTGCAGCTTCAAAGTCCACTTCATCAGACGCGACCATACTCTGGGCTTTATGATGCATTTAGGACCATAACGAGGGAAGAGGGATTTAGTGCACTTTACAGAGGCATTGTTCCTGGTCTATTGCTGCAGGTCTCTCATGGTGCTATTCAGTTCACAGCATACGAGGAGCTCCGTAAAGTTATTATTGATTTTAAGAGTAAGAGAAGTACATTCCATAATCAAAATCCTGATAAATTGTTGAATTCTGTTGATTATGCTGTTCTTGGAGCAACATCAAAACTGGCTGCAATACTGCTAACCTATCCATTTCAGGTTATGCGGTCTCGCTTGCAGCAACGACCTAGTGGTGACGGGGTCCCAAGATATATGGATACTTGGCATGTTGTGAAAGAAACTGCACGATTTGAAGGTATCCGGGGTTTTTACAAAGGAATTACCGCCAACCTCTTGAAAAATGCTCCTGCTTCTTCAATAACATTTATTGTTTATGAAAATGTTTTAAAATTTCTTAAACCGACTATAAGGAATGACTGA 777 0.4427 MSTEAPKRHKWQWENATAGAAAGFATVAVMYPLDVVRTRFQVNDGRVSHLPSYKNTAHAVFTIARSEVCLCTNPVWLVKTRLQLQSPLHQTRPYSGLYDAFRTITREEGFSALYRGIVPGLLLQVSHGAIQFTAYEELRKVIIDFKSKRSTFHNQNPDKLLNSVDYAVLGATSKLAAILLTYPFQVMRSRLQQRPSGDGVPRYMDTWHVVKETARFEGIRGFYKGITANLLKNAPASSITFIVYENVLKFLKPTIRND 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3009g00003 258 Pfam Mitochondrial carrier protein 70 143 IPR018108 -
Vium3009g00003 258 Pfam Mitochondrial carrier protein 11 67 IPR018108 -
Vium3009g00003 258 Pfam Mitochondrial carrier protein 164 252 IPR018108 -
Vium3009g00003 258 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 67 IPR044712 GO:0006862|GO:0055085
Vium3009g00003 258 SUPERFAMILY Mitochondrial carrier 64 246 IPR023395 -
Vium3009g00003 258 Gene3D Mitochondrial carrier domain 2 68 IPR023395 -
Vium3009g00003 258 Gene3D Mitochondrial carrier domain 69 256 IPR023395 -
Vium3009g00003 258 ProSiteProfiles Solute carrier (Solcar) repeat profile. 161 250 IPR018108 -
Vium3009g00003 258 FunFam Folate transporter 1, chloroplastic 63 256 - -
Vium3009g00003 258 SUPERFAMILY Mitochondrial carrier 11 67 IPR023395 -
Vium3009g00003 258 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 141 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3009g00003 Vium-Chr3009 6735 14036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3009g00003 70 251 Chloroplast and Mitochondria Gene Families AT2G47490 40.110 2.06e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3009g00003 K15115 - twl:120011805 351.673