Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3008g00006 ATGTCTTCTACTACCCCAGTTCCTCTAAAAAGCAGCAACACAAAGCTACCACCTCTAAGGGCAAAGAAAGATAGGCACACGAAGGTGAATGGCAGAGAAAGGCGTGTTCTTCTGCCACCTTTGTGTGCTGCTCGCATCTTCCAACTCACTCGTGAGCTAGGTTACAAGACAAACGGAGAAACCATAGGCTGGCTTCTGCGCCAGGCTGAACCCTCCATTATTTCTGCCACTGGGACTGGTATATCACCTTCTATAGTTGATTTAACGTCATCGTCATCTTCACCGTCGCCGTCTTCTTCGTCACTGCCGATACTTCCACTGCCTTCTCAGGACAACAACGTTGTTGTTGATCAACATGCAAATTCCGTTCACGTTTCAATAGACAATGAGATCAATTCTAAAGAGACATTTCTGCCATTGGATTTTGATGTGTTTTCAAACTTTAATGTCGAGTTTTCTGCTGCTGAGATCGAAATGCTCCAGTCATTGATGACTAGGTTGGGCTGA 507 0.4536 MSSTTPVPLKSSNTKLPPLRAKKDRHTKVNGRERRVLLPPLCAARIFQLTRELGYKTNGETIGWLLRQAEPSIISATGTGISPSIVDLTSSSSSPSPSSSSLPILPLPSQDNNVVVDQHANSVHVSIDNEINSKETFLPLDFDVFSNFNVEFSAAEIEMLQSLMTRLG 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3008g00006 168 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 123 IPR005333 GO:0003700
Vium3008g00006 168 MobiDBLite consensus disorder prediction 1 29 - -
Vium3008g00006 168 Pfam TCP family transcription factor 21 117 IPR017887 -
Vium3008g00006 168 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3008g00006 Vium-Chr3008 58064 58570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3008g00006 15 106 TCP Transcription Factor Family AT5G23280 57.609 1.76e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium3008g00006 TCP 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3008g00006 - K16221 var:108322003 290.812