Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3008g00004 ATGATGATGAATCTTCCTAACCAGACAAGGAAGGTTCCTTTTGTAACATTTGTTGTATTAATAAGCTTCATTGTGGGGCCAAAGCTAGTTTTTGGTCAGAGTAGTGACGGAGAAGGAGGTGGTGGTGGTGGCGGTGGCGCTCTTGAGATATTAGCCCAAGATGTATATAGTGGCATGGCCAATTATACATCTGTGTTCAAGAAAGTAATAAAACAACAGTTGGGTTATTGCGTAGTTGATGTGGACGCTGATTGGAATGGGGCATTCAATTTCAGCAAAGATCTTACCTTTTTGACCATCTGTGCCCAGCAAATGAGAGGAGATATTACACAACGCATGTGCACAGAAGCAGAAATACTAGCTTATGGCCAAAGTTTTGCTGGTGGGAAGTCAAGATCCAACTTCTTGAAGCCCAACATAAATTGTAATTTGACCTCATGGGTTAATGGTTGTGAACCCGGATGGGGGTGTAAAGCTAATCAAAAAGTAGACATTGACAGTACCAAGAAAGATATCCCTGTTAGATCTTTAGATTGCCTACCTTGTTGTGAAGGGTTCTTTTGCCCTCGTGGTCTCACTTGCATGATACCTTGCCCATTGGGGTCTTATTGTCCTCTTGGACAACTCAATAAGACTAGTGGAGTATGTCAACCATATCGTTATCAGCTACCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATCTGGGCAGATATTGCGAGTAGCAGTGAGGTATTCTGCTCACCAGGGTCGTTTTGTCCCTCTACAATTGTAAAAAATCCTTGCAATAAAGGGTACTATTGCAGAACAGGTTCTACTTCTCCAGAGCGATGTTTCAAATTGGCAACTTGTGAGCCTAATTCAGCGAATCAAAATATTACTGCATATGGTGTCTTGATTTTTGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAGTACTCGAGAGAGGGCTGTTCAAAGTGTGAGAGAAACCCAAGCCCGTGAAAAATGGAAATCTGCGAAAGATATTGCTAAAAAGCATGCAGTGGGACTACAATCGCAACTATCACGTACATTTTCACGCAAAACTTCAAAGAAGCCAGAGTTGAAAGGTTTTGGTTCTAAACATTCAGATTCTGCTATTCCACCTGCTGGTAAAGGCAAGAAAAAGGATAAAAACAATCTCTCAAAAATACTAAATGATATTGAGCAAAACCCCGATAATCCAGAGGGGTTTAATGTTGAGATAGGAGATAAAAATGTGAAAAAGCAAGCACCAAGGGGCAAACAATTACATACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTAGCTGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAGTGATATTGAGATCAGGAAGAGACCTACTATTGAAGTTGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTAACCGGTAAACTTTATCCTGGTAGAGTTTCAGCTGTCATGGGCCCATCCGGGGCTGGCAAAACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACGACTGGGCAAGTTCATGTAAATGGTCAGGAATCTTCTATCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTGGAGGAGAATTTATGGTTCAGTGCTAGATGCAGACTCCCTGCTGATCTACCAAAAGAAGAAAAGGTGTTAGTGGTTGAAAGAGTCATCGAGTCATTAGGTCTACAGGCAATACGAGATTCTTTAGTCGGAACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGATTGGAAATGGTCATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCTGGTTTGGATAGCTCATCTTCTCAATTACTTCTAAGAGCACTTAGACGTGAAGCTCTTGAAGGTGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTCTCAAGCATGGGAATCAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGACCTATAAACAACTGCCTGTGAGATGGATGCTTCATAATGGGTACCCCGTGCCCATGGATATGCTACAGAGTGTTGAAGGAATGTCCGCCCCAAGTGGTGAAGGCTCATCAAGTGGAGCAGCAACTGGTGGAGAAGAAGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAAGGATATCCTTCACATTAACTTCTTAGCTTCACATGATCTGTCCAATCGGGTTACACCAGGAGTGTTCAACCAATACAAGTACTTTCTTGGAAGAGTGGGTAAGCAAAGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTCTTGATTTTGCTACTAGCTGGCCTTTGCTTAGGTACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTGATAGCAGTATCACTCCTTTCTAAGATTGCGGCTTTGAGATCATTCTCATTGGATAAGTTGCACTATTGGCGGGAAAGCTCTTCAGGCATGAGCAGTTTGGCTTACTTTCTATCAAAGGATACTGTTGACCATTTTAGCACAGTTATCAAGCCACTAGTTTACCTTTCTATGTTCTATTTCTTCAACAATCCAAGATCATCAGTCATAGATAACTATTTTGTTCTACTATGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTCTTACAGCCAGGTCCAGCCCAACTGTGGTCAGCCTTACTTCCAGTGGTTTTGACTCTTGTAGCAACCTATCAAAACGAAGATGATAGCAAATATGTTAAATATCTGTCAGATTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTGATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTAATAAGTCGATGTGGTGCTCTTTATTCTTCTGGGTATGATCTTAAACATTGGTATCAATGCTTAGGCCTTCTTATCGTGATGGGAATAATTAGTCGCATGCTGGCATTTTTCTGCATGATAACCTTCCAAAAGAAATAA 3300 0.4061 MMMNLPNQTRKVPFVTFVVLISFIVGPKLVFGQSSDGEGGGGGGGGALEILAQDVYSGMANYTSVFKKVIKQQLGYCVVDVDADWNGAFNFSKDLTFLTICAQQMRGDITQRMCTEAEILAYGQSFAGGKSRSNFLKPNINCNLTSWVNGCEPGWGCKANQKVDIDSTKKDIPVRSLDCLPCCEGFFCPRGLTCMIPCPLGSYCPLGQLNKTSGVCQPYRYQLPPGKPNHTCGGADIWADIASSSEVFCSPGSFCPSTIVKNPCNKGYYCRTGSTSPERCFKLATCEPNSANQNITAYGVLIFAGLCFLLIIIYNCSDQVLATRERRQASTRERAVQSVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKTSKKPELKGFGSKHSDSAIPPAGKGKKKDKNNLSKILNDIEQNPDNPEGFNVEIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVHVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMSAPSGEGSSSGAATGGEEEAPSFAGELWQDVKCNVEMKKDILHINFLASHDLSNRVTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTVIKPLVYLSMFYFFNNPRSSVIDNYFVLLCLVYCVTGIAYVLAIFLQPGPAQLWSALLPVVLTLVATYQNEDDSKYVKYLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYSSGYDLKHWYQCLGLLIVMGIISRMLAFFCMITFQKK 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3008g00004 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 728 IPR027417 -
Vium3008g00004 1099 CDD ABCG_EPDR 489 715 - -
Vium3008g00004 1099 MobiDBLite consensus disorder prediction 783 803 - -
Vium3008g00004 1099 FunFam ABC transporter G family member 24 485 727 - -
Vium3008g00004 1099 MobiDBLite consensus disorder prediction 327 350 - -
Vium3008g00004 1099 MobiDBLite consensus disorder prediction 365 404 - -
Vium3008g00004 1099 Pfam ABC-2 type transporter 689 1099 IPR043926 GO:0140359
Vium3008g00004 1099 Gene3D - 480 731 IPR027417 -
Vium3008g00004 1099 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 491 732 IPR003439 GO:0005524
Vium3008g00004 1099 ProSitePatterns ABC transporters family signature. 632 646 IPR017871 GO:0005524|GO:0016887
Vium3008g00004 1099 Pfam ABC transporter 511 660 IPR003439 GO:0005524
Vium3008g00004 1099 SMART AAA_5 517 718 IPR003593 GO:0016887
Vium3008g00004 1099 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 447 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3008g00004 Vium-Chr3008 37276 43694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3008g00004 518 713 Calmodulin-binding Proteins AT2G36910 27.442 1.56e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3008g00004 - - gmx:100809312 1957.57