Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3008g00003 ATGGTTGGTGGTAATAAACTGATAGCTGGCTTGTGTTTTTTGCTTATTATCATATACAATTGTTCTGATCAAGTTCTTGCAACTCGAGAAAGAAGACAAGCAAGTACTCGAGAGAGGGCTGTTCAAAGTGTGAGAGAAACCCAAGCCCGTGAAAAATGGAAATCTGCGAAAGATATTGCTAAAAAGCATGCAGTGGGACTACAATCGCAACTATCACGTACATTTTCACGCAAAACTTCAAAGAAGCCAGAGTTGAAAGGTTTTGGTTCTAAACATTCAGATTCTGCTATTCCACCTGCTGGTAAAGGCAAGAAAAAGGATAAAAACAATCTCTCAAAAATACTAAATGATATTGAGCAAAACCCCGATAATCCAGAGGGGTTTAATGTTGAGATAGGAGATAAAAATGTGAAAAAGCAAGCACCAAGGGGCAAACAATTACATACTCAAAGTCAAATTTTCAAGTATGCATATGGTCAGATTGAAAAAGAAAAGGCTTTAGCTGAACAAAACAAAAACTTAACCTTTTCTGGAGTAATTTCAATGGCTAGTGATATTGAGATCAGGAAGAGACCTACTATTGAAGTTGCTTTTAAAGATTTAACCCTCACTTTGAAAGGGAAAAACAAACATTTATTGAGATGTGTAACCGGTAAACTTTATCCTGGTAGAGTTTCAGCTGTCATGGGCCCATCCGGGGCTGGCAAAACAACATTTCTTTCTGCTTTAACTGGAAAAGCAACTGGATGTCACACGACTGGGCAAGTTCATGTAAATGGTCAGGAATCTTCTATCAGGTCATACAAGAAAATCATTGGGTTTGTGCCACAAGATGATATTGTGCATGGAAATTTGACAGTGGAGGAGAATTTATGGTTCAGTGCTAGATGCAGACTCCCTGCTGATCTACCAAAAGAAGAAAAGGTGTTAGTGGTTGAAAGAGTCATCGAGTCATTAGGTCTACAGGCAATACGAGATTCTTTAGTCGGAACAGTGGAGAAACGAGGAATCTCTGGAGGTCAAAGGAAAAGAGTAAACGTTGGATTGGAAATGGTCATGGAACCTTCCCTTCTAATTTTGGATGAACCCACATCTGGTTTGGATAGCTCATCTTCTCAATTACTTCTAAGAGCACTTAGACGTGAAGCTCTTGAAGGTGTAAACATATGTATGGTCCTTCACCAACCGAGTTACACCTTGTTCAAGATGTTTGACGATTTTATACTACTTGCAAAAGGAGGTCTTACAGTGTATCATGGACCAGTGAACAAAGTGGAAGAGTATTTCTCAAGCATGGGAATCAATGTCCCTGACCGTGTCAACCCTCCAGATTACTTCATTGACATTTTAGAAGGAATAGTAAAATTAAGCCCAAGCTTAGGAGTGACCTATAAACAACTGCCTGTGAGATGGATGCTTCATAATGGGTACCCCGTGCCCATGGATATGCTACAGAGTGTTGAAGGAATGTCCGCCCCAAGTGGTGAAGGCTCATCAAGTGGAGCAGCAACTGGTGGAGAAGAAGAAGCACCTTCTTTTGCTGGAGAACTTTGGCAGGATGTAAAGTGCAATGTTGAGATGAAGAAGGATATCCTTCACATTAACTTCTTAGCTTCACATGATCTGTCCAATCGGGTTACACCAGGAGTGTTCAACCAATACAAGTACTTTCTTGGAAGAGTGGGTAAGCAAAGACTAAGAGAAGCTAGAACACAGGCTGTGGATTTCTTGATTTTGCTACTAGCTGGCCTTTGCTTAGGTACACTTGCCAAAGTGAGTGATGAATCATTTGGAGCAACTGGTTACACATACACTGTGATAGCAGTATCACTCCTTTCTAAGATTGCGGCTTTGAGATCATTCTCATTGGATAAGTTGCACTATTGGCGGGAAAGCTCTTCAGGCATGAGCAGTTTGGCTTACTTTCTATCAAAGGATACTGTTGACCATTTTAGCACAGTTATCAAGCCACTAGTTTACCTTTCTATGTTCTATTTCTTCAACAATCCAAGATCATCAGTCATAGATAACTATTTTGTTCTACTATGTTTAGTCTATTGTGTCACTGGCATAGCTTATGTGTTAGCAATCTTCTTACAGCCAGGTCCAGCCCAACTGTGGTCAGCCTTACTTCCAGTGGTTTTGACTCTTGTAGCAACCTATCAAAACGAAGATGATAGCAAATATGTTAAATATCTGTCAGATTTGTGCTACACCAAGTGGGCTCTTGAAGCATTTGTGATATCAAATGCTAAAAGATATGCTGGAGTTTGGTTAATAAGTCGATGTGGTGCTCTTTATTCTTCTGGGTATGATCTTAAACATTGGTATCAATGCTTAGGCCTTCTTATCGTGATGGGAATAATTAGTCGCATGCTGGCATTTTTCTGCATGATAACCTTCCAAAAGAAATAA 2415 0.3992 MVGGNKLIAGLCFLLIIIYNCSDQVLATRERRQASTRERAVQSVRETQAREKWKSAKDIAKKHAVGLQSQLSRTFSRKTSKKPELKGFGSKHSDSAIPPAGKGKKKDKNNLSKILNDIEQNPDNPEGFNVEIGDKNVKKQAPRGKQLHTQSQIFKYAYGQIEKEKALAEQNKNLTFSGVISMASDIEIRKRPTIEVAFKDLTLTLKGKNKHLLRCVTGKLYPGRVSAVMGPSGAGKTTFLSALTGKATGCHTTGQVHVNGQESSIRSYKKIIGFVPQDDIVHGNLTVEENLWFSARCRLPADLPKEEKVLVVERVIESLGLQAIRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSQLLLRALRREALEGVNICMVLHQPSYTLFKMFDDFILLAKGGLTVYHGPVNKVEEYFSSMGINVPDRVNPPDYFIDILEGIVKLSPSLGVTYKQLPVRWMLHNGYPVPMDMLQSVEGMSAPSGEGSSSGAATGGEEEAPSFAGELWQDVKCNVEMKKDILHINFLASHDLSNRVTPGVFNQYKYFLGRVGKQRLREARTQAVDFLILLLAGLCLGTLAKVSDESFGATGYTYTVIAVSLLSKIAALRSFSLDKLHYWRESSSGMSSLAYFLSKDTVDHFSTVIKPLVYLSMFYFFNNPRSSVIDNYFVLLCLVYCVTGIAYVLAIFLQPGPAQLWSALLPVVLTLVATYQNEDDSKYVKYLSDLCYTKWALEAFVISNAKRYAGVWLISRCGALYSSGYDLKHWYQCLGLLIVMGIISRMLAFFCMITFQKK 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3008g00003 804 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 196 437 IPR003439 GO:0005524
Vium3008g00003 804 MobiDBLite consensus disorder prediction 70 109 - -
Vium3008g00003 804 MobiDBLite consensus disorder prediction 488 508 - -
Vium3008g00003 804 Gene3D - 185 436 IPR027417 -
Vium3008g00003 804 SMART AAA_5 222 423 IPR003593 GO:0016887
Vium3008g00003 804 Pfam ABC transporter 216 365 IPR003439 GO:0005524
Vium3008g00003 804 Pfam ABC-2 type transporter 394 804 IPR043926 GO:0140359
Vium3008g00003 804 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 155 791 - -
Vium3008g00003 804 CDD ABCG_EPDR 194 420 - -
Vium3008g00003 804 FunFam ABC transporter G family member 24 190 432 - -
Vium3008g00003 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 433 IPR027417 -
Vium3008g00003 804 ProSitePatterns ABC transporters family signature. 337 351 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3008g00003 Vium-Chr3008 32760 37300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3008g00003 223 418 Calmodulin-binding Proteins AT2G36910 28.837 1.48e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3008g00003 - - vum:124832789 1519.21