Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3007g00012 ATGTGCAGTACCATCATCAGAGTTGATGTTGGACTTAATGGTGCAAAGACTTTCATCAAAGTGAGGAAAGATAATTCCTCTTTGGTTGTTCCACAAGCCAAAGTGAATGAGAATAGTAAGAGCTCTTTGAGTTTGGTTGCTTGGGTACTTTTTGGAAGCTCTTCATTTCTCAATGTCATATTTATTGGTGCCTTATGCATGTGCTTTTTCTACATCTTTCAGTACAAAAAGAAGCTTAGAGGAATTGGCAAAAGTGCCAATGCCCTTGAAACTAACTTGCGTTGCTTCTGTTATGAGGAGCTTGAAAGAGCTACAAATGGTTTCCAGAAAGAGTTAGGAAGAGGGTCTTTTGGTGTTGTCTATGAAGGAGTCATAAACATAGGCTCAGAAATTCCAATAGCAGTGAAAAAGCTAAACACTTTGCTTTTCCAACAGGTTGAGATGGAGTTCAAGAACGAGTTACATGCCATTGGTCTCACTCATCACAAGAACTTGGTGCGGTTGATAGGCTATTGTGAGGCTGAAAAAGAAAGATTGTTGGTTTATGAGTATATGAGCAATGGCACTTTGGCAAGTCTTATTTTCAGTGAGGTGAAACCTGAGTGGAAACTGAGGTTAGAGATTGCATCTGGGGTAGCTAGAGGACTTGCATATTTGCATGAAGAGTGCATCACTCAGATTATCCACTGTGACATAAAGCCACAAAACATACTCATTGATGAGTACTATAATGCCAGAATTTCTGACTTTGGATTGGCCAAGCTCTTGAAGATGAACCAAAGCAGAACCAACACTGCCATAAGGGGAACAAAGGGGTATGTGGCACTTGAATGGTTTAAAAACATGGCTATCACAGCTAAAGTGGATGTCTATAGTTATGGTGTGTTGTTGCTTGAGATCATTTGCTGCAGAAGAAATGTAGAAATGGATCTAGAAGAGGAAGAGAAGGTTATACTAATTGATTGGGCTTGTGATTGCTATTCAAGAGGTACTTTTGATCCCTTGGTTGAAGATGACAAGGAGGCATTCGATGACAAAAAGAACATGATGAAGTTGGTGATGATTTCCATTTGGTGCATTCAAGAGGATCCAATTCTTAGACCAACCATGAAAAAAGTGACACAGATGCTTGAAGGTGTTGTAGAAGTCGAACCTCCACCATTCCCCTCACAATTTAGTAGACATTCTCAAAATCCATGA 1200 0.3983 MCSTIIRVDVGLNGAKTFIKVRKDNSSLVVPQAKVNENSKSSLSLVAWVLFGSSSFLNVIFIGALCMCFFYIFQYKKKLRGIGKSANALETNLRCFCYEELERATNGFQKELGRGSFGVVYEGVINIGSEIPIAVKKLNTLLFQQVEMEFKNELHAIGLTHHKNLVRLIGYCEAEKERLLVYEYMSNGTLASLIFSEVKPEWKLRLEIASGVARGLAYLHEECITQIIHCDIKPQNILIDEYYNARISDFGLAKLLKMNQSRTNTAIRGTKGYVALEWFKNMAITAKVDVYSYGVLLLEIICCRRNVEMDLEEEEKVILIDWACDCYSRGTFDPLVEDDKEAFDDKKNMMKLVMISIWCIQEDPILRPTMKKVTQMLEGVVEVEPPPFPSQFSRHSQNP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3007g00012 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vium3007g00012 399 SUPERFAMILY Protein kinase-like (PK-like) 93 392 IPR011009 -
Vium3007g00012 399 ProSiteProfiles Protein kinase domain profile. 106 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3007g00012 399 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 185 385 - -
Vium3007g00012 399 ProSitePatterns Protein kinases ATP-binding region signature. 112 137 IPR017441 GO:0005524
Vium3007g00012 399 SMART serkin_6 106 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3007g00012 399 FunFam S-receptor-like serine/threonine-protein kinase 76 184 - -
Vium3007g00012 399 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 15 388 - -
Vium3007g00012 399 Gene3D Transferase(Phosphotransferase) domain 1 185 388 - -
Vium3007g00012 399 Gene3D Phosphorylase Kinase; domain 1 82 184 - -
Vium3007g00012 399 Pfam Protein kinase domain 109 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3007g00012 Vium-Chr3007 109781 111129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3007g00012 92 389 Receptor kinase-like Gene Family AT1G60800 37.855 3.10e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium3007g00012 Pkinase 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3007g00012 - - vra:106773297 754.977