Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3007g00011 ATGGCTTCCCCTTTGCTTCCCTTGCTCTTCCTCTCAATGATTCTGTTACCCTTTCAACTCATCAGTGTTGTAGCCCAAACCAAAACCAACTTAGTTATTGGTGATTCTCATACTGCAGGAAAAGACTCAGCCCCATGGTTGGTTTCATCACCTTCTGGTGACTTTTCCTTTGGTTTCCTCCCGCTTGAGGACTCTACTGATCATTTCATACTTTGCATTTGGTATGCAAAGATTCAACCCAACACCATAGTTTGGTTTGCTAATAGGGACAAGCCTGCACCAAAGGGCACAAAGGTGGAGCTTACAACTAATGATGGGTTGGTGCTCACTGCCGCAAATGGTGACCGGTTATGGAATACTGTAACCAGTTCTAGAGTTTCTGGGGGTTCGTTTAATGACACTGGCAACTTAGTGCTTCAGGATGGTGACTCCAACAGTGCATGGGAGAGTTTCAAGGATTATAGGAACACCTTGCTGCCCTATCAGACTCTGGAAAGGGGTCAAAAGCTTTCTTCTATGCTTAGGGAGAATGATTTCAACAGGGGCAGGTTTGAGCTATTTTTCCAAAATGATGGTAATCTTGTGATGCACTCTATAAATTTACCATCTTTGTATTCTAATGAAAACTACTATGAAAGTGGAACCGACGAGTCCAACACTTCTGGTGCTGGGACACTACTGGTGTTTGATAGCTCAGGAGATATGTATATTGTGAGAGCGAACAATGGAAGGTATAATTTGTCAGAAGATGGTGTTGGAGTTTCTACCACTCAATTTTACCTTAGAGCAACTCTTGATTTTGATGGGGTGTTCACGCTCTATCGACATCCCAAGGGTTCTTCTGGCAGTGGAGGCTGGACCCCAGTGTGGTCTCATCCAGATAATATCTGTAAGAACTATCTTGCTAGTGCAAGTAGTGGTGTCTGTGGATATAATAGCATATGCAGTTTAAGAGATGATAAGAAACCAACTTGTCAGTGCCCAAAATGGTACTCATTGACTGACCCTAAGGATCCCTACGGTAACTGCAAACCAGATTTTGTACAAGAATGTTTTGAAGATGATCTTAGTAACAGAAAGAATCAATATGATTTTGAGGTGTTGACAGATACTGATTGGCCTCTTTCAGATTATCAGCTTCAAAGACCCTTTAATGAAGACCAATGCAAACAATCTTGTATGGAAGATTGTATGTGTTCTGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGCTGCCACTTTCAAATGGTAGAGTTGATCCCACGCTTAATGGTGCAAAGGCCTTCATGAAAGTGAGGAAGGACAATTTCTCCTTGATTAGTCCTCCAACAATCATTGTGAAGAACAATAGGAATACTTTGACTTTGATTTTGTCAGTGCTTTTGGGCAGTTCTGCTTTGCTCAATCTCATATTGGTCTTTGCAATCTGCTTGAGCACTTCCTACGTTTTCCAGTACAAGAAGAGGCTTAGAAGAGCTGGAAAAACTGACACTACTGTGGAGACCAACTTGCGTTGCTTCACTTATGAGGAACTTGAAGAAGCCACTGATGGCTTTGACAAAGTGCTAGGGAAGGGAGCTTTTGGCGTTGTGTATGAAGGAGTCGTCAACATAGGTTCTGTTACTCGTGTGGCTGTGAAACGATTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGTCATTGGCCTCACACACCACAAGAACTTGGTTCGTATACTTGGATTTTGTGAGACTGAATCAGAAAGGATACTTGTTTATGAGTACATGAGCAATGGCACTTTAGCAAGTCTTCTTTTTAATGTCGAGAAACCAAGTTGGAAACTGAGGCTACAAATTGCATCTGGGGTTGCTAGAGGGCTTCTATATTTGCATGAAGAGTGCATCACACAGATCATCCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTACTATGTTGCAAGAATATCAGACTTTGGATTGGCCAAGCTTTTGAACATGAACCAGAGCAGAACCAACACTGCAATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACGGCTAAAGTGGATGTCTATAGTTATGGGATGCTGTTGCTTGAGATAGTTTCATGCAGAAAAAGTGTGGAATTTGAGTTAGAAGATGAATCCAAAGCAATCCTAAGTGAATGGGCTTATGAGTGCTACTCTGAAGGTACTCTTCATGCCTTGGTTGAGGGTGATAAAGAGGCATTGGATGACATGAAGACAGTGGAGAAGTTGGTGATGATTGCCCTTTGGTGTGTGCAAGAGGATCCAGGTTTTAGACCAACCATGAGAAATGTGACACAGATGCTTGAAGGTGTTGTTGAAGTGCAAATTCCACCATGCCCCTCACAAGTTAGTGTTCAATATCTCGTCATGGTTTCACCTATATTTGCCTTTCTTCTTTGCTCAATGGTGCTGCTAAACATTTTTGTTGTAGCCCAAACCAGAAGCAGTAAAATCATTGATCAGTATCTTCTGAAAGAAACCATCAAAGCCTCATGGGTAGTTTCATCTTCTGGTGAGATAAACCAAACCACAAGAAACATAACTGTTGGTGATTCACATTTTGCAGAAACAACTAGCAGCAACTCCTCAACGTGGGTGGTTTCACGTCTTGGCCACTTTGCCTTTGGTTTTCTTCCACTTGAGGACACTAACCATTTCTTACTTTCCATTTGGTATGCTAAGATTCCTGGCAAGACTGTTGTTTGGTATGCCAATGGAGACACTCCTGCTCCAAAGGGGTCAAAGGTTGAACTCACTGGTGATGATGGGTTAGTCCTCACTGCCCCAAATGGTGAACTGTTATGGAAAACTAAGTCCCTTACTGGTAAAGTTCATCAAGGGTTTTTAAAGGACAACGGAAACTTTGTGCTTGTGGATGAAAATCATCAAGGTGCGTGGGAGACGTTTAAGCATCCAAGGGACACCTTGTTGCCCACACAAACTCTTGAAAAAGGTGCGAAGCTTTCATCGAGATTTGTAGAGTCAAATTACTCAGAAGGAAGGTTTGAGATGATGCTTCAAATGGATGGCATTCTTTCCATTCATGCTTTAAACTCGCCATCTGGGTATGCCAATGAAAACTACTACGAAAGTAGGACTGAAGAGTCCAACACATCAAGTCCTGGAATTCGTTTGGTGTTTGAACCATCAGGGTACGTGTATGTTTTGAGGAAGAACAGTGAGAAATACAACTTGTCAACATGGAGTGGAGCCTCTACTACTGATGAATCTTACTTTAGAGCAACTCTTAATTTTGATGGGGTGTTTACACTCTATCAATATTCTCAGAGTTCGTTTGGGAGTGATGGTTGGAGTGCTGTTTGGTCTCAGCCAGATAACATCTGTCTCAGCAGGCTTGCCACTGAAGGTAGTGGTGTTTGCGGGTTCAATAGTGTGTGTACGTTGGGAAGTAATCAAAGGCCAAGTTGTCAATGCCCAAAATGGTACTCTTTGGTTGACCCTAATGACCCCTATGGTAGCTGCAAGCCAGATTTCATACAAGGATGTGCAGAAGATGAACTCATTGGAAAAGTAGGTGCAGCTGGATATGATTTTGAGGTGTTGGTAAATACAGATTGGCCTCTTTCAGATTATGTGCTTCTTAAGCCCTTTACTGAAGAATAATGTGAACAGTCATGTTTGGAAGATTGTATGTGTGCAGTTGCCATCTACAAGTCAGGAAGTGATTGCTTCAAGAAGAAGTTGCCTCTTTCAAATGGTAGAGTTGATGTTGGACTTAATGGTGCAAAGACTTTCATCAAAGTGAGGAAAGATAATTCCTCTTTGGTTGTTCCACATGCCAAAGTGAATGAGAATAGTAAGAGCTCTTTGAGTTTGGTTGCTTGGGTACTTTTTGGAAGCTCTTCATTTCTCAATGTCATATTTATTGGTGCCTTATGCATGTGCTTTTTCTACATCTTTCAGTACAAAAAGAAGCTTAGAGGAATTGGCAAAAGTGCCAATGCCCTTGAAACTAACTTGCGTTGCTTCTGTTATGAGGAGCTTGAAAGAGCTACAAATGGTTTCCAGAAAGAGTTAGGAAGAGGGTCTTTTGGTGTTGTCTATGAAGGAGTCATAAACATAGGCTCAGAAATTCCAATAGCAGTGAAAAAGCTAAACACTTTGCTTTTCCAACAGGTTGAGATGGAGTTCAAGAACGAGTTACATGCCATTGGTCTCACTCATCACAAGAACTTGGTGCGGTTGATAGGCTATTGTGAGGCTGAAAAAGAAAGATTGTTGGTTTATGAGTATATGAGCAATGGCACTTTGGCAAGTCTTATTTTCAGTGAGGTGAAACCTGAGTGGAAACTGAGGTTAGAGATTGCATCTGGGGTAGCTAGAGGACTTGCATATTTGCATGAAGAGTGCATCACTCAGATTATCCACTGTGACATAAAGCCACAAAACATACTCATTGATGAGTACTATAATGCCAGAATTTCTGACTTTGGATTGGCCAAGCTCTTGAAGATGAACCAAAGCAGAACCAACACTGCCATAAGGGGAACAAAGGGGTATGTGGCACTTGAATGGTTTAAAAACATGGCTATCACAGCTAAAGTGGATGTCTATAGTTATGGTGTGTTGTTGCTTGAGATCATTTGCTGCAGAAGAAATGTAGAAATGGATCTAGAAGAGGAAGAGAAGGTTATACTAATTGATTGGGCTTGTGATTGCTATTCAAGAGGTACTTTTGATCCCTTGGTTGAAGATGACAAGGAGGCATTCGATGACAAAAAGAACATGATGAAGTTGGTGATGATTTCCATTTGGTGCATTCAAGAGGATCCAATTCTTAGACCAACCATGAAAAAAGTGACACAGATGCTTGAAGGTGTTGTAGAAGTCGAACCTCCACCATTCCCCTCACAATTTAGTAGACATTCTCAAAATCCATGA 4971 0.4158 MASPLLPLLFLSMILLPFQLISVVAQTKTNLVIGDSHTAGKDSAPWLVSSPSGDFSFGFLPLEDSTDHFILCIWYAKIQPNTIVWFANRDKPAPKGTKVELTTNDGLVLTAANGDRLWNTVTSSRVSGGSFNDTGNLVLQDGDSNSAWESFKDYRNTLLPYQTLERGQKLSSMLRENDFNRGRFELFFQNDGNLVMHSINLPSLYSNENYYESGTDESNTSGAGTLLVFDSSGDMYIVRANNGRYNLSEDGVGVSTTQFYLRATLDFDGVFTLYRHPKGSSGSGGWTPVWSHPDNICKNYLASASSGVCGYNSICSLRDDKKPTCQCPKWYSLTDPKDPYGNCKPDFVQECFEDDLSNRKNQYDFEVLTDTDWPLSDYQLQRPFNEDQCKQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDPTLNGAKAFMKVRKDNFSLISPPTIIVKNNRNTLTLILSVLLGSSALLNLILVFAICLSTSYVFQYKKRLRRAGKTDTTVETNLRCFTYEELEEATDGFDKVLGKGAFGVVYEGVVNIGSVTRVAVKRLNTFLLEEVQKEFKNELNVIGLTHHKNLVRILGFCETESERILVYEYMSNGTLASLLFNVEKPSWKLRLQIASGVARGLLYLHEECITQIIHCDIKPQNILLDDYYVARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGMLLLEIVSCRKSVEFELEDESKAILSEWAYECYSEGTLHALVEGDKEALDDMKTVEKLVMIALWCVQEDPGFRPTMRNVTQMLEGVVEVQIPPCPSQVSVQYLVMVSPIFAFLLCSMVLLNIFVVAQTRSSKIIDQYLLKETIKASWVVSSSGEINQTTRNITVGDSHFAETTSSNSSTWVVSRLGHFAFGFLPLEDTNHFLLSIWYAKIPGKTVVWYANGDTPAPKGSKVELTGDDGLVLTAPNGELLWKTKSLTGKVHQGFLKDNGNFVLVDENHQGAWETFKHPRDTLLPTQTLEKGAKLSSRFVESNYSEGRFEMMLQMDGILSIHALNSPSGYANENYYESRTEESNTSSPGIRLVFEPSGYVYVLRKNSEKYNLSTWSGASTTDESYFRATLNFDGVFTLYQYSQSSFGSDGWSAVWSQPDNICLSRLATEGSGVCGFNSVCTLGSNQRPSCQCPKWYSLVDPNDPYGSCKPDFIQGCAEDELIGKVGAAGYDFEVLVNTDWPLSDYVLLKPFTEEXCEQSCLEDCMCAVAIYKSGSDCFKKKLPLSNGRVDVGLNGAKTFIKVRKDNSSLVVPHAKVNENSKSSLSLVAWVLFGSSSFLNVIFIGALCMCFFYIFQYKKKLRGIGKSANALETNLRCFCYEELERATNGFQKELGRGSFGVVYEGVINIGSEIPIAVKKLNTLLFQQVEMEFKNELHAIGLTHHKNLVRLIGYCEAEKERLLVYEYMSNGTLASLIFSEVKPEWKLRLEIASGVARGLAYLHEECITQIIHCDIKPQNILIDEYYNARISDFGLAKLLKMNQSRTNTAIRGTKGYVALEWFKNMAITAKVDVYSYGVLLLEIICCRRNVEMDLEEEEKVILIDWACDCYSRGTFDPLVEDDKEAFDDKKNMMKLVMISIWCIQEDPILRPTMKKVTQMLEGVVEVEPPPFPSQFSRHSQNP 1656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3007g00011 1656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1442 1642 - -
Vium3007g00011 1656 ProSiteProfiles Protein kinase domain profile. 1363 1638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3007g00011 1656 SUPERFAMILY Protein kinase-like (PK-like) 507 816 IPR011009 -
Vium3007g00011 1656 Gene3D - 996 1137 IPR036426 -
Vium3007g00011 1656 FunFam S-receptor-like serine/threonine-protein kinase 1333 1441 - -
Vium3007g00011 1656 SUPERFAMILY Protein kinase-like (PK-like) 1350 1649 IPR011009 -
Vium3007g00011 1656 Gene3D Phosphorylase Kinase; domain 1 1339 1441 - -
Vium3007g00011 1656 Gene3D Phosphorylase Kinase; domain 1 494 598 - -
Vium3007g00011 1656 Pfam Protein kinase domain 1366 1632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3007g00011 1656 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3007g00011 1656 Gene3D Transferase(Phosphotransferase) domain 1 1442 1644 - -
Vium3007g00011 1656 Pfam D-mannose binding lectin 922 1006 IPR001480 -
Vium3007g00011 1656 Pfam D-mannose binding lectin 82 167 IPR001480 -
Vium3007g00011 1656 ProSiteProfiles Bulb-type lectin domain profile. 22 152 IPR001480 -
Vium3007g00011 1656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vium3007g00011 1656 CDD B_lectin 881 995 IPR001480 -
Vium3007g00011 1656 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 214 IPR036426 -
Vium3007g00011 1656 SMART serkin_6 1363 1634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3007g00011 1656 SMART serkin_6 520 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3007g00011 1656 SMART blect_4 879 995 IPR001480 -
Vium3007g00011 1656 SMART blect_4 36 155 IPR001480 -
Vium3007g00011 1656 ProSitePatterns Protein kinases ATP-binding region signature. 1369 1394 IPR017441 GO:0005524
Vium3007g00011 1656 Gene3D - 24 152 IPR036426 -
Vium3007g00011 1656 Gene3D - 871 994 IPR036426 -
Vium3007g00011 1656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 864 993 - -
Vium3007g00011 1656 Gene3D Transferase(Phosphotransferase) domain 1 599 798 - -
Vium3007g00011 1656 FunFam S-receptor-like serine/threonine-protein kinase 489 598 - -
Vium3007g00011 1656 SUPERFAMILY alpha-D-mannose-specific plant lectins 909 1044 IPR036426 -
Vium3007g00011 1656 ProSiteProfiles Bulb-type lectin domain profile. 873 993 IPR001480 -
Vium3007g00011 1656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 152 - -
Vium3007g00011 1656 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 803 - -
Vium3007g00011 1656 CDD B_lectin 47 151 IPR001480 -
Vium3007g00011 1656 Gene3D - 153 281 IPR036426 -
Vium3007g00011 1656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1484 1496 IPR008271 GO:0004672|GO:0006468
Vium3007g00011 1656 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 799 - -
Vium3007g00011 1656 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Vium3007g00011 1656 ProSitePatterns Protein kinases ATP-binding region signature. 526 550 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3007g00011 Vium-Chr3007 97030 105557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3007g00011 506 803 Receptor kinase-like Gene Family AT1G60800 40.694 5.33e-68 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium3007g00011 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3007g00011 - - vra:106773297 3197.53