Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3007g00001 ATGGAGTTTGCATCTTCTTCTTTATCATCATCATCTTCATCCTTCTTAACATCAGAACCCCATTTCATACACGATGTGTTCATCAACTTTGGTGGAGAAGAAATCGGTAGAAGATTTGTTTCTCATCTCCAATCTGTCCTTTTACAAGCTCAAGTCAAAACTTTTATTAGCCAGGAGAATCTGCAAGAAGGAATGAAGCTGGAAGAGCAGCTTCGAGCAATAGGAGGCACTAAGATTACAATAATTGTTTTCTCCAAATCTTACGCTGAAACTACCCGCTGTCTTCTTGAGCTTCAAAAAATCATTGAATGCCACGAAACATTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGGCCCATCGGATTTACGATATCAGATGTATGATTTTGGAAAAACGTTGGAAGAAACTGCACACAGAAGCTATTCAGGAGAACAACTAAAATATGCGTTGTCCAAGTGGAACCATGCACTCACCACAGCTGCAGTTATGACTGGTTGGGATGTCAGAAATTTCAGGCATGATGCTGAACTTGTAGACGTAATTGTTAACCGAGTTAAGACATTACTGGACTATAAAGACTTGTTTATTACCGAATATCCTGTTGGATTAGAGTCCCGCGTGGAAGACGTGATTAAATGTATTCAAAATCAATCCACCAAAGTGTGTATGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTCATTGAGAATATTAGTTCTGAAGGGTATTTTGCTTTGCAAGAAAATCTTCTTTCTGATGTCCTAAAATCCAACTTGGAGGTGAAAAGCGTTGGGATGGGAAGAACTATGATCGAGAATAGATTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGACGTGAATCACATTGGCCAATTAGAAAACCTATGCGGAAGTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAAATGTTAGCCTGCTGAACCAAATCAGAGTTAATTATGTTTATCAAACGCATCTTTTGAACGAAAATGAGTCACTTGAGCTTTTTAGTTGGCATGCCTTTAGAGATGCAATACCAAAAAAAGAATGGAATGAACTCGCAAGAAATGTCGTTGTTTATTGTGGAGGACTACCGCTAGCTCTTCAGTTCCTTGGTTCCTGTTTATGTGATAGGACAATAGAAGTGTGGGAAAATATATTGTTGAAACTACAAAGAATTCCCCCGGATGAACTTCTGAGCGTATTAAAAATAAGCTTTGAAGATTTACGTGATACGGAAAAGGATATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGAAAGAGACTATGTGACAGAGATATTAAATGGCTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAGCGTGGCCTCATAAAAGTTGAAAGGAACAACAAAATTCAAATGCATAATATGTTACAAGAGATGGAAAGAGAAATTAATCGTCAAGAATGA 1530 0.3778 MEFASSSLSSSSSSFLTSEPHFIHDVFINFGGEEIGRRFVSHLQSVLLQAQVKTFISQENLQEGMKLEEQLRAIGGTKITIIVFSKSYAETTRCLLELQKIIECHETFGQIVLPVFYEIGPSDLRYQMYDFGKTLEETAHRSYSGEQLKYALSKWNHALTTAAVMTGWDVRNFRHDAELVDVIVNRVKTLLDYKDLFITEYPVGLESRVEDVIKCIQNQSTKVCMIGIWGMGGSGKTTIAKAIYNRIYREFIGKSFIENISSEGYFALQENLLSDVLKSNLEVKSVGMGRTMIENRFSRKKLLIVLDDVNHIGQLENLCGSREWFGQGTVIIITTRNVSLLNQIRVNYVYQTHLLNENESLELFSWHAFRDAIPKKEWNELARNVVVYCGGLPLALQFLGSCLCDRTIEVWENILLKLQRIPPDELLSVLKISFEDLRDTEKDIFLDVCCFFIGKERDYVTEILNGCGLHADIGITVLIERGLIKVERNNKIQMHNMLQEMEREINRQE 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3007g00001 509 PRINTS Disease resistance protein signature 389 403 - -
Vium3007g00001 509 PRINTS Disease resistance protein signature 296 310 - -
Vium3007g00001 509 PRINTS Disease resistance protein signature 225 240 - -
Vium3007g00001 509 SUPERFAMILY "Winged helix" DNA-binding domain 425 509 IPR036390 -
Vium3007g00001 509 Gene3D - 354 438 IPR042197 -
Vium3007g00001 509 Gene3D - 197 349 IPR027417 -
Vium3007g00001 509 Gene3D - 19 196 IPR035897 -
Vium3007g00001 509 Pfam NB-ARC domain 206 420 IPR002182 GO:0043531
Vium3007g00001 509 SMART till_3 23 165 IPR000157 GO:0007165
Vium3007g00001 509 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Vium3007g00001 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 447 IPR027417 -
Vium3007g00001 509 Coils Coil 484 509 - -
Vium3007g00001 509 Pfam TIR domain 24 188 IPR000157 GO:0007165
Vium3007g00001 509 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 507 IPR044974 GO:0006952
Vium3007g00001 509 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 164 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3007g00001 Vium-Chr3007 5294 8228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3007g00001 203 508 WRKY Transcription Factor Family AT5G45050 37.061 1.87e-58 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3007g00001 - - vun:114165946 744.577