Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3006g00007 ATGGCTGCACCGCCAAATAGCATTCAAAACATGTTAAGGGCTGCAGTGCAATCAGTTCAATGGACTTACAGCCTCTTCTGGCAACTTTGTCCCCAACAAGGGATTTTGACGTGGGGTGATGGATACTACAACGGAGCAATTAAGACTAGGAAGACGGTTCAAGCAATGGAAGTTAGCACCGAGGAAGCTTCTCTGCAAAGAAGCGAGCAGCTTCGAGAGTTATACGAATCTTTGTCTGCTGGAGAAGCGAACTCGCAAACACGAAGACCATGTGCTGCTTTGTCTCCTGAGGATCTAACGGAATCAGAATGGTTCTATCTGTTGTGTGTCTCTTTCTCCTTTCATCCTGGTGTCGGGTTGCCGGGAACAGCATATGCCAGGAGGCAGCATATATGGCTAACTGGTGCAAACGAAGTAGAGAGCAAAGCATTTTCCAGAGCTATTCTTGCCAAGAGTGCTCATATTCAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCGTGGTTGAGCTGGGCACAACCGACAAGATGGAAGAAGACCTAAATTTCATCCAACACATAAAGAGTTTCTTCATAGATCAGCACCCTCCGACGGCAAACCCTGCACTGTCAGAGCACTCCACCTCCAATCCCACATCTTCTTCATACCCAGTTGTCGTCACTGCCACTACTGCACCACCCAACAATATTCCCAACCAAAACGAGATGAACGTCGTTGATAAAGGAAAAGAAGTTAAGTTGAATTCTGAAGCAGGATTAGCAGTTCGTAACAACAGTTTCATACCGACCGAACTAATGGAGCTGGACACGTTGGAAGGGTTTCGGGTCGGGTCACCCGGAGATGGATCCAACCACTTGGATTCGTTCCCCACTGAGGCGTCCATGGCACTGTGTTCTGCAGGTTTGGAACTTCTTCAACTTCAACTACCACCACAACCTCCAGAACACCCTCCCTCAGAAAACAAAGCACAAGGAGACACAGACACTCACTACTCGCAGACAGTGTCCAGCATCCTCCAAAAGAACTCCGGGTGGTGGCCGGACTCACCCTCCGTCAACCACCTCACCGATTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCACCGACGAGTACCGCGGCCACTTCCAGATGACGGTGGCAGACGTAACATCGCAGTGGCTCCTCAAGTACATTCTCTTCAGTGTTCCTTACCTGCACGCCAACCGGATAAAGGGGAAGAGCGCCCCGTCATACGAGACAAGCCATGTGATGGCGGAGCGGCGTCGGAGAGAGAAGCTGAATGAGAGGTTTCTGATTTTGCGTTCAATGGTACCTTTTGTAACGAGAATGGACAAGGCATCGATTCTGGGAGACACCATCGAATACATAAAACAGCTGAGGGAGAAGATTGAGAGCCTGGAGGCACGTGAGCGGCACGCGGGGAAGAGGAGGATAAGGGAGGTGGAGGTTTCGATCATAGAGAGCGATGCACTGTTGGAGTTGGAGTGTGTACATAGGGAAGGGTTGTTGCTGGATGTGATGACATTGTTGAGGGAGTTAGGGGTTGAAGTGATGATGGTGCAATCCTGGGTTAGGGATGATGGAATCTTTGTCGCAGAGATGAGGGCCAAAATCAAGGAAAATGGGAACGGGGAAAAGGCTAGTATTGTGGAAGTCAAGAATGCCCTAAACCAGATTATACCTCGTCATATAACTCACCATGACCCATACACACTGCCTTCCAATGATCATTTTTAA 1740 0.4931 MAAPPNSIQNMLRAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGEANSQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGVGLPGTAYARRQHIWLTGANEVESKAFSRAILAKSAHIQTVVCIPVLEGVVELGTTDKMEEDLNFIQHIKSFFIDQHPPTANPALSEHSTSNPTSSSYPVVVTATTAPPNNIPNQNEMNVVDKGKEVKLNSEAGLAVRNNSFIPTELMELDTLEGFRVGSPGDGSNHLDSFPTEASMALCSAGLELLQLQLPPQPPEHPPSENKAQGDTDTHYSQTVSSILQKNSGWWPDSPSVNHLTDSFQSAFNKWNSGTDEYRGHFQMTVADVTSQWLLKYILFSVPYLHANRIKGKSAPSYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEARERHAGKRRIREVEVSIIESDALLELECVHREGLLLDVMTLLRELGVEVMMVQSWVRDDGIFVAEMRAKIKENGNGEKASIVEVKNALNQIIPRHITHHDPYTLPSNDHF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3006g00007 579 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 190 IPR025610 -
Vium3006g00007 579 MobiDBLite consensus disorder prediction 307 327 - -
Vium3006g00007 579 PANTHER TRANSCRIPTION FACTOR TT8 4 562 - -
Vium3006g00007 579 SMART finulus 417 466 IPR011598 GO:0046983
Vium3006g00007 579 Coils Coil 450 477 - -
Vium3006g00007 579 Gene3D - 410 474 IPR036638 GO:0046983
Vium3006g00007 579 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 411 460 IPR011598 GO:0046983
Vium3006g00007 579 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 412 473 IPR036638 GO:0046983
Vium3006g00007 579 Pfam Helix-loop-helix DNA-binding domain 414 461 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3006g00007 Vium-Chr3006 93295 101093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3006g00007 330 561 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.718 1.16e-57 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium3006g00007 bHLH-MYC_N 4.7e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3006g00007 - - gmx:100780422 879.782