Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3005g00005 ATGGATACCTGTGGTAGTACATGTGAGATAGTGGAATCAAGGGAAGAAATAATATCTGAGATTAAAATGGTTGACAAACCTGAGAGTAGTTATGGTCACAAATCAGGAAAAAGGTATTCGATTGAGAATGATATTAATCAGCTTTTCCAGGCTATTGATATTAAAAGTTCATCAAGAAGTCACAGTTCATCACGTTTACAAAAGAATGCTCTTAAAAGGCCAATAAAAGTCACTTCATCTCAGGCATCAGGAATTGGCATCTCAGAGCCTGTAAGTTTGAAGCAGGCACTTAGAGGGTTGTGCATCTCTCAGGCCTCAGAAATGGCTGCTTTGAAAAGATTGTCTAAGCCATGCAGTTCATCTAGAGCATCAGAGGCTGGCACCATCAAAAGGTTGTACACAGCGGTGGTAGATGAGGGGAAAGGGAACTTGGTAGAAATTTCTCTAGTGCCAGAGATATCTACTGCACCTTGTAATAAATTGCCCAGTGTAACTACATCAAGTTCAATTGATCATTGTACTAGTCCTTTGGTTGATGCTACAAAACCAAAAGAAATGATGATTGGATTTTCATCCCAAGATCAGATTGTTCCTCTGCCTTTAGAGGTTGAGGGTTACAAACCAGTCATGGACATTGGAACACCAATACTTGCAAATTTGTCACCAGTTGCCTCTGCTAGTGAAGTGGTGCCAGAGGTTCTAAGGGATCCTGCTTCCTTAAGCAAAGCTTCTCTTATTTCTTCAATGCCAGGTAAGGGGCAGGAAGCAAATTTACTTCCTGCATCTTGTCCACCTAGCTCTAGCGCTGGCAATGGAGGGGATAAATCTACAAGCAGTAGTACATGTTTGTCAAAGCCAATATTCAATAACTTGAATTTCCTTAAGAAAAAGGTAAAGCAGGATTTTAGTTCTTCCTCAAGTTGCTCCACTCCATGTACAAGTAATTTGGACAAGGAGGTTGGAAATTCTGATTTGAAGCACGGAGTGAAAGAAAATGAGAAATTGTCTCCAAGCTGTTCAAATCATAGCATTGAAGTTAACTCAATTAGTGTTGGTACGGATTCAAGCAAATCTGGTTTCAGCTTGAACTGCAACAAGAGAACTAAGTTTCTGGTGACCAAAGTTGATGAGAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCTCAAAGTTCAAAAAGTAGCATTGGAGAGTATAGTAGTAGCACAAGCATCAGTGAGGAAAGCAGTCTAAGTGGTTCCAGCCGTGGTGGCCACAGACCTCACATGTCAAAACATATGAGATGGGAAGCTATCCGAGTTGTTCAGCAGCAACATGGTAATTTAAATTTGAAGCACTTTAAGCTGCTAAAGAGGCTTGGTAGTGGGGACATTGGAACTGTTTACCTTGCGGAATTAATTGGTACAAGCTGCCTTTTTGCACTCAAAGTGATGGACAATGAATTTTTGTCAAGTCGGAAGAAGATGTTCAGGGCCCAAACTGAGAGAGAGATCCTTCAGATGCTAGATCATCCATTTCTTCCTACACTGTACTCCCATATTGCAACAGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCAGGAGGAGATCTGCATGTGCTGCGACAGAGGCAGTCATACAAGAGTTTCTCGGAACAAGCAACTAGGTTTTATGTTGCTGAGGTTCTTCTTGCCCTGGAGTATTTGCATATGCTGGGAGTTGTGTACCGAGACCTAAAGCCGGAAAATATCCTAGTGCGAGAAGATGGTCATATTATGCTGACAGATTTTGATTTGTCACTCAGATGTTCTGTCAATCCAATGTTAGTCAAGTCATCTTCACCTGACACAGATGCCACGAAGAAGACCTGTTCTGAAGCTAGCTGCATAGACCCTTTCTGTCTCCAGCCAGATTGGCAAGTTTCGTGCTTTACTCCCATTCTATTATCTGCTGGAGCAAAATCCCGAAAGATGAAGTCTGACATAGCTTCTCATGTTGGTCCACTGCCACAGCTTGTAGTGGAGCCTACCAGTGCACGGTCTAACTCCTTTGTTGGAACCTATGAATATCTTGCTCCGGAGATCATCAAGGGTGAGGGTCATGGGAGTGCAGTAGACTGGTGGACTTTTGGTATTCTTTTGTTTGAGCTTTTATATGGTAAGACTCCATTCAAGGGCCAATCAAATGAGGACACATTAGCCAATGTTGTGTCACAATGCCTAAAGTTCCCTGGTGCTCCAATAGTCAGTTTTCATGCCAGAGATTTGATCAAAGGGTTGTTGATAAAGGATCCTGAAAATCGATTAGGTTCTGTAAAAGGTGCTGCTGAAATAAAGCAGCACCCGTTTTTTGAAGGTCTCAATTGGGCTCTAATACGGTGTGCGGCACCACCAGAGCTCCCCAAGTTTCGGGATTTTGGAACAAGTGCTCCATCTATGGCTGCAAATAAGGAGAATGCAAATGATTTAGAGGATATAGAAGATTGTGAAGAGTTTGAGCTGTTTTAG 2487 0.421 MDTCGSTCEIVESREEIISEIKMVDKPESSYGHKSGKRYSIENDINQLFQAIDIKSSSRSHSSSRLQKNALKRPIKVTSSQASGIGISEPVSLKQALRGLCISQASEMAALKRLSKPCSSSRASEAGTIKRLYTAVVDEGKGNLVEISLVPEISTAPCNKLPSVTTSSSIDHCTSPLVDATKPKEMMIGFSSQDQIVPLPLEVEGYKPVMDIGTPILANLSPVASASEVVPEVLRDPASLSKASLISSMPGKGQEANLLPASCPPSSSAGNGGDKSTSSSTCLSKPIFNNLNFLKKKVKQDFSSSSSCSTPCTSNLDKEVGNSDLKHGVKENEKLSPSCSNHSIEVNSISVGTDSSKSGFSLNCNKRTKFLVTKVDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESSLSGSSRGGHRPHMSKHMRWEAIRVVQQQHGNLNLKHFKLLKRLGSGDIGTVYLAELIGTSCLFALKVMDNEFLSSRKKMFRAQTEREILQMLDHPFLPTLYSHIATDKLSCLVMEYCPGGDLHVLRQRQSYKSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTDATKKTCSEASCIDPFCLQPDWQVSCFTPILLSAGAKSRKMKSDIASHVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGILLFELLYGKTPFKGQSNEDTLANVVSQCLKFPGAPIVSFHARDLIKGLLIKDPENRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGTSAPSMAANKENANDLEDIEDCEEFELF 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3005g00005 828 FunFam Serine/threonine-protein kinase D6PK-like 444 529 - -
Vium3005g00005 828 Gene3D Transferase(Phosphotransferase) domain 1 671 795 - -
Vium3005g00005 828 MobiDBLite consensus disorder prediction 260 277 - -
Vium3005g00005 828 SUPERFAMILY Protein kinase-like (PK-like) 420 797 IPR011009 -
Vium3005g00005 828 Gene3D Phosphorylase Kinase; domain 1 444 525 - -
Vium3005g00005 828 SMART serkin_6 446 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3005g00005 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 567 579 IPR008271 GO:0004672|GO:0006468
Vium3005g00005 828 ProSiteProfiles Protein kinase domain profile. 446 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3005g00005 828 CDD STKc_phototropin_like 444 800 - -
Vium3005g00005 828 Gene3D Transferase(Phosphotransferase) domain 1 526 595 - -
Vium3005g00005 828 PANTHER FLIPPASE KINASE 1-RELATED 327 796 - -
Vium3005g00005 828 MobiDBLite consensus disorder prediction 388 416 - -
Vium3005g00005 828 MobiDBLite consensus disorder prediction 381 423 - -
Vium3005g00005 828 Pfam Protein kinase domain 447 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3005g00005 828 Pfam Protein kinase domain 674 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium3005g00005 828 MobiDBLite consensus disorder prediction 251 277 - -
Vium3005g00005 828 FunFam serine/threonine-protein kinase D6PK-like 530 597 - -
Vium3005g00005 828 FunFam serine/threonine-protein kinase D6PK-like 672 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3005g00005 Vium-Chr3005 50408 55228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3005g00005 312 828 AGC Kinase Gene Family AT3G52890 61.914 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium3005g00005 Pkinase 4.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3005g00005 - - gmx:100784955 1369.37