Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3000g00038 ATGGAAGAGATGCCGGGTTCAGCAACGGCAATAAATTCTTCCAATATTGGATTTCAGCTATTGAAGAAACAAGGTTGGAAAGAAGGGACTGGTCTTGGAGTATCTGAGCAGGGTAGATTAGAACCCGTGGAAACTTATGTAAAGAATAATAAACGAGGTTTGGGAGCAGATAAAGTGAAGAAAAAGGCCGTGAAAGTGAAACCGGATCATAGCGATTCCTCTAAAGAGACCAGTCAACAGGATCATTTACCTCAAAAGAAAAGCAAAACATTGTCTAAACGGATGAGAAAGATGCAGGAGTTGGAGAAGAAAATGCAAGAGAAGGAGTTTGAACGATCTTTTTTCAGAGAGTTCTGGCCAGAAAATGTATAA 372 0.4005 MEEMPGSATAINSSNIGFQLLKKQGWKEGTGLGVSEQGRLEPVETYVKNNKRGLGADKVKKKAVKVKPDHSDSSKETSQQDHLPQKKSKTLSKRMRKMQELEKKMQEKEFERSFFREFWPENV 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3000g00038 123 Coils Coil 88 111 - -
Vium3000g00038 123 PANTHER BAT4 PROTEIN-RELATED 3 123 IPR039146 -
Vium3000g00038 123 MobiDBLite consensus disorder prediction 50 106 - -
Vium3000g00038 123 ProSiteProfiles G-patch domain profile. 13 59 IPR000467 GO:0003676
Vium3000g00038 123 MobiDBLite consensus disorder prediction 51 106 - -
Vium3000g00038 123 SMART G-patch_5 11 57 IPR000467 GO:0003676
Vium3000g00038 123 Pfam G-patch domain 14 56 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3000g00038 Vium-Chr3000 228356 230444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3000g00038 11 55 C2H2 Transcription Factor Family AT5G26610 53.333 3.25e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3000g00038 - - gmx:100812494 189.889