Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3000g00030 ATGGTGAACGTGGTGGAATTGCAGAAACAGCTGCAGAGGTGGCAGCAGAGTGGCAACAATGTCAATGTCGACGCCAACGGAGAGCTCATGTATGTCAAAGTCATGACTGATGAACAGTTGGAAACTCTGAGGAAACAGATTGCTGTTTATGCCACCATTTGTGACCAACTTATTGAGATGCACAGAACACTCTCAGCTCAGCAGGATCTTGCAGGGGCTAGATTGGGAAACCTGTACTGTGATCCATTGTTGACATCTGGTGGACACAAAATAACATCAAGACAAAGGTGGACACCTACACCTGTGCAGCTTCAGATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGGAAAAAATCAAAGAGATAACTGCTGAGCTGGGCCAGCATGGTCAAATTTCTGAAACAAATGTGTACAACTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAACTGCAAAATGTGGCTCCTAGCAACACTGAATCAGAAGTGGACACTGAGGTTGATTCTAAGGATAAGAAGACAAAACCTGAGGAGTTTCTGTCTCAACATAACATAACAACTTCTGGAGGATCCGAAAAGCTGTGCTTTCAGAACCCTCAGGTGTACTCTGATTTGCAGTACTTGAACACTGATTCCAACAAGCCGTATTCCATGTTCCCATCAGATGGCAGTTTGAAATCCACAAGAAATTTGACTCATGTCTCTCTTTTTAATCAGGTGCTGTCAAATTCAAGGAGTGAGTATGCAGGTGGAAAAATGGAAGTTGGTGGAACAGTGAGCTACAATTTGTTCCACCAAACAGGAGATTGCAATCTGGGGTCTGATTTTTAG 846 0.4338 MVNVVELQKQLQRWQQSGNNVNVDANGELMYVKVMTDEQLETLRKQIAVYATICDQLIEMHRTLSAQQDLAGARLGNLYCDPLLTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAPSNTESEVDTEVDSKDKKTKPEEFLSQHNITTSGGSEKLCFQNPQVYSDLQYLNTDSNKPYSMFPSDGSLKSTRNLTHVSLFNQVLSNSRSEYAGGKMEVGGTVSYNLFHQTGDCNLGSDF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3000g00030 281 MobiDBLite consensus disorder prediction 153 181 - -
Vium3000g00030 281 SMART HOX_1 92 159 IPR001356 GO:0003677
Vium3000g00030 281 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Vium3000g00030 281 PANTHER WUSCHEL-RELATED HOMEOBOX 13 15 268 IPR044559 GO:0003700
Vium3000g00030 281 CDD homeodomain 94 155 IPR001356 GO:0003677
Vium3000g00030 281 SUPERFAMILY Homeodomain-like 92 156 IPR009057 -
Vium3000g00030 281 Gene3D - 96 160 - -
Vium3000g00030 281 Pfam Homeodomain 94 154 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3000g00030 Vium-Chr3000 183781 185928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3000g00030 30 277 Wox Gene Family AT4G35550 51.880 2.20e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium3000g00030 Homeodomain 8.1e-19 CL0123