Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3000g00026 ATGATGAAGAGAGAAAGAGAAGTTGATAGCGTAACCATGGCCAACTACTTGATGTTGCTTTCTGCAGGAGGTGAATTTGAGAGCACGAACTACTTGAACTACTCTTCCAACCACCGTGTGTTTGAGTGCAAGACGTGTAAGAGGCAGTTTCCGTCGTTTCAAGCTTTGGGAGGGCACCGTGCGAGTCACAAGAAACCTAGGTTGATGGTCGGAGAGAGTGAGCATAACCAAGTTCTTCATGGTTCACCACCAAAACCTAAGACTCATGAGTGTTCTGTCTGTGGTTTGGAGTTTGCGATAGGGCAAGCTTTGGGAGGACACATGAGACGCCATAGAACATCATCAAATGGAAACACGAACAATGCTACTGCTACCACTGTTCATAATACTTCTTCACCGAAAATGAACCACAAGGGTAGCAGCAACGAGAGAGTTCTGTTTCCTGATCTGAATTTGACGCCATTAGAGAATGATTTGGAGTTTTTGAAGATCAGACAACCAGCTCCTTTGGTTCACTGCTTCAATTGA 528 0.4489 MMKREREVDSVTMANYLMLLSAGGEFESTNYLNYSSNHRVFECKTCKRQFPSFQALGGHRASHKKPRLMVGESEHNQVLHGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRTSSNGNTNNATATTVHNTSSPKMNHKGSSNERVLFPDLNLTPLENDLEFLKIRQPAPLVHCFN 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3000g00026 175 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vium3000g00026 175 SMART c2h2final6 89 111 IPR013087 -
Vium3000g00026 175 SMART c2h2final6 41 63 IPR013087 -
Vium3000g00026 175 MobiDBLite consensus disorder prediction 108 141 - -
Vium3000g00026 175 Gene3D Classic Zinc Finger 38 111 - -
Vium3000g00026 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vium3000g00026 175 MobiDBLite consensus disorder prediction 109 139 - -
Vium3000g00026 175 PANTHER ZINC FINGER PROTEIN ZAT5 6 158 - -
Vium3000g00026 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Vium3000g00026 175 Pfam C2H2-type zinc finger 40 66 - -
Vium3000g00026 175 Pfam C2H2-type zinc finger 89 113 - -
Vium3000g00026 175 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Vium3000g00026 175 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3000g00026 Vium-Chr3000 155739 156702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3000g00026 2 162 C2H2 Transcription Factor Family AT2G37430 44.706 9.49e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium3000g00026 zf-C2H2_6 9.2e-10 CL0361