Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3000g00021 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTCAGAGCTGAATTGGCCCAACAACAGAATAATATCAACGAAGTTCCTTCATCTTCGAACTCTCTCAAATCTCTTTTGGACGCTGCCACCCCCACACCCAGATTGTCCAAGCGAGACAAACACCGAAAGCTTCGATCTTCCGAACACCCTCCAAAAGAAGCCAACAAGGAAACTGAAACTGAAACAGAGGGTTCAGCCAATAAGAAAAACAAGAAGAGAAAGAGGAAGGTAGAGGGCGATGACGTGGCAAATGGAGTTCCCGACAACACACCACAGAAAAACAGCAAGAAGAAGAAAAAGAAGAAGAAGCTGAAGAAGAACAAGAAAAAGCCCAAAACCGCGGAGGAAAATGGCTCTAATGGTGGAGGGGAAGTGCCTGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACAATGGTGATGTTCCTACAAAGGTTTATGTTGGAGGAATTCCTTATTATTCAACCGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGTATTTTCCTGAAAGTGGCAAGTTTAGAGGGATTGCCATTATTAGTTTTAAGACCGAAGCAGCAGCTAAACGGGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAGCCATATAAAGCAACGCGAGCCAATAAAACATCGGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAGTATATGTTGGGAATTTGTCATGGGATATAACCGAGGAAGAACTGAGGAAATTCTTCAATAATTGTGAGATAACGTCTATTCGATTTGGTATGGATAAGGAGACGGGAGAGTTTCGAGGGTATGCTCATGTGGATTTCGGTGATAGTCAGTCACTGAAAACAGCACTTACATTGGACCAAAACGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCAGTTCCTCTGATGAAAAAACCAGGAATTCGTAACAGCTCGGCAGTTAATGAAGCTAATGGTGATAAATCAACTTCCTCAGGAAGTGGCAAGATGAATGGAGCTGATGGTGATAAATCAAGTTCCACAGTAAGTGGGAAGATGAAGAGAAGGACGTGCTATGAATGTGGTGAGAAAGGACATGGTTTTTCGGAATGTCCTAAGAAACAAACAGGTGCTGCAACTACAACCTAA 1212 0.4249 MVLSNKKLKLKLRAELAQQQNNINEVPSSSNSLKSLLDAATPTPRLSKRDKHRKLRSSEHPPKEANKETETETEGSANKKNKKRKRKVEGDDVANGVPDNTPQKNSKKKKKKKKLKKNKKKPKTAEENGSNGGGEVPEATELTKTNTTTSQDNGDVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCMYFPESGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKTSDFAPEILEGYNRVYVGNLSWDITEEELRKFFNNCEITSIRFGMDKETGEFRGYAHVDFGDSQSLKTALTLDQNVLFGRPVRISCAVPLMKKPGIRNSSAVNEANGDKSTSSGSGKMNGADGDKSSSTVSGKMKRRTCYECGEKGHGFSECPKKQTGAATTT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3000g00021 403 SMART rrm1_1 159 231 IPR000504 GO:0003723
Vium3000g00021 403 SMART rrm1_1 254 325 IPR000504 GO:0003723
Vium3000g00021 403 MobiDBLite consensus disorder prediction 338 403 - -
Vium3000g00021 403 Gene3D - 43 244 IPR012677 -
Vium3000g00021 403 MobiDBLite consensus disorder prediction 57 93 - -
Vium3000g00021 403 CDD RRM1_PHIP1 160 231 IPR034361 -
Vium3000g00021 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 322 IPR000504 GO:0003723
Vium3000g00021 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 226 IPR000504 GO:0003723
Vium3000g00021 403 MobiDBLite consensus disorder prediction 19 139 - -
Vium3000g00021 403 SUPERFAMILY RNA-binding domain, RBD 148 238 IPR035979 GO:0003676
Vium3000g00021 403 SUPERFAMILY Retrovirus zinc finger-like domains 371 398 IPR036875 GO:0003676|GO:0008270
Vium3000g00021 403 MobiDBLite consensus disorder prediction 339 374 - -
Vium3000g00021 403 SUPERFAMILY RNA-binding domain, RBD 246 338 IPR035979 GO:0003676
Vium3000g00021 403 MobiDBLite consensus disorder prediction 377 391 - -
Vium3000g00021 403 MobiDBLite consensus disorder prediction 105 120 - -
Vium3000g00021 403 MobiDBLite consensus disorder prediction 19 38 - -
Vium3000g00021 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 235 IPR000504 GO:0003723
Vium3000g00021 403 Gene3D - 249 334 IPR012677 -
Vium3000g00021 403 ProSiteProfiles Zinc finger CCHC-type profile. 379 394 IPR001878 GO:0003676|GO:0008270
Vium3000g00021 403 Gene3D - 350 403 - -
Vium3000g00021 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 329 IPR000504 GO:0003723
Vium3000g00021 403 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 59 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3000g00021 Vium-Chr3000 127524 129513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3000g00021 158 327 Eukaryotic Initiation Factors Gene Family AT2G36660 26.519 3.58e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3000g00021 - - gmx:100814693 582.793