Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3000g00018 ATGATGGTTTCTCGGGGGCTGTTCGGGTGGTCCCCGCCACATATACAGCCTCTCACGCCGGTCTCCGAGGTTTCGGAGCCGCCGGAGTCGCCGTCGCCGTATCTGGACCTCGGGGCCGAGACCTCCGCGTCGCAGCCGATGGAGGTCGAGGAAGAGATGGAGGAGGCTGAAGAGATTGAGCCGCCGCCTGCCGCCGTTCCCTTCTCTCACCTCTTCGCCTGCGCCGACCGCCTCGACTGGTTTCTCATGATCGTCGGCTCCCTCGCCGCCGCCGCGCACGGCACCGCTCTAGTCGTTTACTTGCATTACTTCGCCAAGGTTCTTTGGGTTCCTAAGCAGTTTTCGGCGGAAGATCAGTTTCAGAGGTTCAAGGAGCTTGCTTTAACCATTGTTTATATTGCTGGTGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCGTGTTGGATTCTTACTGGAGAACGGCAGACTGCTGTGATCAGATCAAAATATGTCCAAGTATTACTTAACCAAGATATGAGTTTTTTTGATACTTATGGAAATAATGGAGACATTGTGAGTCAAGTATTAAGTGATGTGCTGCTCATTCAGTCTGCTCTTAGTGAAAAGGTTGGGAATTATATTCATAATATGGCAACATTCTTCAGTGGTCTTGTTATTGCTTTTATCAATTGTTGGCAGATTGCATTGATAACATTAGCTACAGGTCCATTTATTGTTGCTGCAGGAGGAATATCAAATATATTCCTCCACAGGCTTGCCGAGAATATTCAAGATGCATATGCTGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCCTATATAAGGACCTTGTATGCATTTACAAATGAAACATTGTCTAAATATTCATATGCAACATCGCTTCAAGCTACTCTTAGATATGGTATATTGATAAGTCTTGTTCAAGGGCTTGGCCTTGGTTTTACTTATGGACTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGGCTCCTGGTTATACATGGAAAAGCTCATGGTGGTGAAATTGTAACAGCTCTGTTTGCTGTGATTCTAAGTGGCTTGGGATTGAATCAAGCAGCAACAAATTTCTACTCATTTGATCAAGGGCGCATAGCTGCCTATAGACTATTTGAGATGATTAGCCGGTCATCCTCATCTTTTAATCATGATGGCAGTGCTCCAGCTTCTGTGCAAGGAAATATAGAGTTTCGGAATGTATACTTCAGTTATCTTTCTCGCCCTGAAATCCCTATCTTGAGTGGGTTTTATCTCACTGTTCCTGCTAAAAAGACTGTGGCACTTGTTGGAATAAATGGCTCTGGTAAAAGTAGTATTATTCCCCTTATGGAGCGATTCTATGATCCAACTTTAGGGGAAGTTCTTTTAGATGGTGAAAATATAAAGAATATGAAACTGGAATGGTTAAGGAGTCAGATAGGACTGGTCACCCAGGAACCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGCAGAGATACCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACCTTTATCAGCTCATTAGATAAAGGTTATGACACACAGGTTGGCAGGGCAGGTCTAGCTTTAACAGAAGAGCAGAAAATAAAGCTTTCTATTGCAAGAGCTGTGCTTTTAAATCCATCCATTCTTCTTCTTGACGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGTCTGTTCAGGAAGCTCTTGACCTGCTAATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTTATAAAGAATGCTGATTACATAGCTGTCATGGAGGATGGTCAACTTGTTGAAATGGGTACACATGATGAGTTACTGACCCTGGATGGCTTATACGCAGAGCTTCTACGATGTGAAGAAGCCACAAAACTTCCCAAGAGGATGCCTGTTCGAAATTATAAGGAGACTGCAACTTTCCAAATGGAGAAGGATTCTTCAGAAAGTCACAGCTTCAAAGAACCTTCATCTCCTAAAATGATAAAGTCACCCTCTCTTCAAAGAGTTTCTGCCCTTTTTCGGCCCTCGGATGGCTTTTTTAATTCACAAGAATCACCAAAAATTCGGAGCCCACCATCAGAGAAGATGATGGAAAATGGACAGTCTTTAGATTCAGCAGACAAGGAACCATCAATTAAAAGGCAGGATAGTTTTGAAATGAGACTACCGGAGTTACCCAAGATTGATGTTCAATGTGTGCATAGACAAAAGTCAAATGGTTCTGACCCAGAATCCCCTGTTTCACCCCTTTTAACATCTGATCCTAAAAATGAACGCTCCCATTCACAGACTTTTAGCAGGCCTGATAGTCATTCCGGTGATCTTTCGGTGAAAATGACTGAAACAAAGGATGCGAGGCATCGAAAACAACCCTCAATATGGAGGCTAGCAGAACTTAGTTTTGCAGAGTGGCTTTATGCTGTGTTAGGAAGCACGGGCGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCCTATGTTATTGGTTTGGTGGTGACAGATTACTATAAAATTGATGAAGAACGTCACTTCCAAAGGGAGATAGACAAATGGTGCTTGATCATTGCCTGCATGGGTATTGTGACGGTTGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGGGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAACTGGATGGTTTGATGAAGAGGAAAATAGTGCTGACAACCTATCAATGCGCTTGGCCAATGATGCTACGTTTGTGCGAGCAGCTTTCAGTAACCGCCTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGCATTTCTCATTGGTGTTTTGCTGCACTGGCGATTAGCACTTGTGGCTTTAGCAACACTTCCAGTTCTTTGTGTTTCTGCTGTTGCCCAGAAATTATGGCTTGCTGGATTTTCAAAGGGCATACAAGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGGAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTGATGGAACTCTACCAGTTACAGTTAAATAAAATATTTAAGCAAAGCTTTCTTCATGGAGTGGCCATTGGTTTTGCATTTGGCTTTTCACAGTTTCTGCTCTTTGCATGTAATGCCCTTCTACTTTGGTACACTGCAATATGTGTAAATAAGGGATATGTGAAGACACCTACTGCTCTCAAGGAGTACATGGTTTTCTCATTTGCTACCTTTGCCCTTGTGGAGCCTTTTGGGTTGGCTCCTTACATACTTAAGCGACGTAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAGATTGATCCTGATGATAACAAAGCAATGAAGCCACCCAATGTATATGGGAGCATTGAGTTGAAAAATGTTGATTTTTGTTATCCTTCCCGGCCAGAAGTGTTGGTATTAAGCAATTTTAGCCTCAAAGTCAATGGAGGGCAAACAATTGCTGTAGTGGGAGTTTCCGGGTCAGGGAAGAGCACAATAATATCTTTGATCGAGAGATTCTACGATCCAGTTTCTGGCCAAGTTTTGCTAGATGGGAGGGATTTAAAGCAATATAATTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCGATTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGACATAATGCCAGTGAAGCTGAAATAAAGGAGGCTGCAAGAATAGCAAATGCTCATCACTTCATCAGTAGTTTGCCTCATGGTTATGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCTGGACAAAAACAGAGAATTGCAATTGCAAGGGTAATTCTTAAAAATGCTCCTATTTTGTTGCTGGATGAAGCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGACACCCTAGTAATGGGAAACAAAACCACTATTTTAATAGCACACAGAGCTGCAATGATGAGGCACGTGGACAACATAGTAGTTCTAAATGGAGGAAGGATAGTGGAGGAGGGGACCCATGATTCATTGGTGGCAAAAAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 4200 0.4281 MMVSRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDLGAETSASQPMEVEEEMEEAEEIEPPPAAVPFSHLFACADRLDWFLMIVGSLAAAAHGTALVVYLHYFAKVLWVPKQFSAEDQFQRFKELALTIVYIAGGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIAFINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLSKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRLLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSFNHDGSAPASVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKTVALVGINGSGKSSIIPLMERFYDPTLGEVLLDGENIKNMKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDTTMDQIEEAAKIAHAHTFISSLDKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERSVQEALDLLMLGRSTIIIARRLSLIKNADYIAVMEDGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPVRNYKETATFQMEKDSSESHSFKEPSSPKMIKSPSLQRVSALFRPSDGFFNSQESPKIRSPPSEKMMENGQSLDSADKEPSIKRQDSFEMRLPELPKIDVQCVHRQKSNGSDPESPVSPLLTSDPKNERSHSQTFSRPDSHSGDLSVKMTETKDARHRKQPSIWRLAELSFAEWLYAVLGSTGAAIFGSFNPLLAYVIGLVVTDYYKIDEERHFQREIDKWCLIIACMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNETGWFDEEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVAFLIGVLLHWRLALVALATLPVLCVSAVAQKLWLAGFSKGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYQLQLNKIFKQSFLHGVAIGFAFGFSQFLLFACNALLLWYTAICVNKGYVKTPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNKAMKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTIAVVGVSGSGKSTIISLIERFYDPVSGQVLLDGRDLKQYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEIKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVILKNAPILLLDEASSSIESESSRVVQEALDTLVMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLVAKNGLYVRLMQPHFGKALRQHRLV 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3000g00018 1399 MobiDBLite consensus disorder prediction 695 725 - -
Vium3000g00018 1399 MobiDBLite consensus disorder prediction 754 803 - -
Vium3000g00018 1399 Gene3D ABC transporter type 1, transmembrane domain 70 655 IPR036640 GO:0005524|GO:0016020
Vium3000g00018 1399 Gene3D - 1148 1387 IPR027417 -
Vium3000g00018 1399 MobiDBLite consensus disorder prediction 754 778 - -
Vium3000g00018 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1150 1387 IPR003439 GO:0005524
Vium3000g00018 1399 SMART AAA_5 1177 1364 IPR003593 GO:0016887
Vium3000g00018 1399 SMART AAA_5 430 609 IPR003593 GO:0016887
Vium3000g00018 1399 FunFam ABC transporter B family member 20 1140 1389 - -
Vium3000g00018 1399 FunFam ABC transporter B family member 6 997 1147 - -
Vium3000g00018 1399 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 403 638 IPR003439 GO:0005524
Vium3000g00018 1399 FunFam ABC transporter B family member 20 393 640 - -
Vium3000g00018 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 81 370 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3000g00018 1399 SUPERFAMILY ABC transporter transmembrane region 71 378 IPR036640 GO:0005524|GO:0016020
Vium3000g00018 1399 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 827 1119 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3000g00018 1399 Pfam ABC transporter 424 568 IPR003439 GO:0005524
Vium3000g00018 1399 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 378 - -
Vium3000g00018 1399 MobiDBLite consensus disorder prediction 658 730 - -
Vium3000g00018 1399 CDD ABC_6TM_Pgp_ABCB1_D2_like 822 1133 - -
Vium3000g00018 1399 FunFam ABC transporter B family member 6 767 995 - -
Vium3000g00018 1399 Pfam ABC transporter 1168 1316 IPR003439 GO:0005524
Vium3000g00018 1399 Gene3D ABC transporter type 1, transmembrane domain 1052 1147 IPR036640 GO:0005524|GO:0016020
Vium3000g00018 1399 Gene3D ABC transporter type 1, transmembrane domain 766 994 IPR036640 GO:0005524|GO:0016020
Vium3000g00018 1399 FunFam ABC transporter B family member 20 70 406 - -
Vium3000g00018 1399 SUPERFAMILY ABC transporter transmembrane region 814 1135 IPR036640 GO:0005524|GO:0016020
Vium3000g00018 1399 MobiDBLite consensus disorder prediction 19 45 - -
Vium3000g00018 1399 Coils Coil 249 269 - -
Vium3000g00018 1399 Gene3D - 393 640 IPR027417 -
Vium3000g00018 1399 PANTHER ABC TRANSPORTER B FAMILY 48 639 IPR039421 -
Vium3000g00018 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1138 1386 IPR027417 -
Vium3000g00018 1399 Pfam ABC transporter transmembrane region 84 353 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3000g00018 1399 Pfam ABC transporter transmembrane region 835 1094 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vium3000g00018 1399 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 637 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3000g00018 Vium-Chr3000 104453 114326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3000g00018 46 696 Calmodulin-binding Proteins AT2G36910 43.247 4.12e-162 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3000g00018 K05658 - gmx:100799399 2598.54