Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium3000g00002 ATGGCGGGGATTCAGATGCTACCGTACGGCGACGTCGATTCCAATTTGAGGGCTATGGCCGGGTCCGCCGAGGGTTTTGGCCGCCACGCCATCGGCGGCCTCCATGGTTCTCTGTATATCGTCACCAATCTCGCAGATGATGGTCCTGGGTCCCTTCGCGAAGGATGTCGAAGAAATGAACCTTTGTGGATTGTTTTCGAGGTTTCTGGTACGATTAATCTGTCGTCGTACCTGAGTGTGTCGTCGTATAAGACAATAGATGGGAGAGGGCATAAGGTGAAATTGACTGGGAAAGGTCTGAGGCTGAAGGAATGTGAGCACATCATCGTGTGCAACCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTTGATGGCATTCAAATCAAACCAAATTCTAGGCATATATGGATCGATCGATGCACCCTTCGTGATTACGACGATGGCCTTATAGACATCACAAGACAAAGCACCGATATCACTGTATCCAGGTGTTACTTTGGGCAGCATGACAAGACCATGCTCATTGGAGCTGACCCGACTCACGTTGGTGATAGATGCATCCGGGTGACCATTCACCACTGTTTCTTTGATGGAACGCGGCAAAGACAACCACGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGGGTTTATGCTGTTTGCGCTAGTGTGGAATCCCAGATATACTCTCAATGTAACATATATGAAGCAGGAGCTAAGAAAAAGACTTTTGAATTTTATACTGAGAAGGCGGCAGATAAGGAAGAGCAAAAGTCCGGCATCATAGTATCAGAAGGAGACATGCTTTTGAATGGTGCACAGCCATGCCTGCTTACACAAAATAGAGAGGTGGCCATGTTCCATCCTAGTGAATATTACCCGACATGGACGATGGAAGCAGCTGCGCATTCTCTCAGAGAGATCCTCCAATTGTGTACAGGTTGGCAATCCATTTCTAGGCCAGTAGATCGTATGGTCTCTAATTAA 1005 0.4726 MAGIQMLPYGDVDSNLRAMAGSAEGFGRHAIGGLHGSLYIVTNLADDGPGSLREGCRRNEPLWIVFEVSGTINLSSYLSVSSYKTIDGRGHKVKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCTLRDYDDGLIDITRQSTDITVSRCYFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGVYAVCASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEEQKSGIIVSEGDMLLNGAQPCLLTQNREVAMFHPSEYYPTWTMEAAAHSLREILQLCTGWQSISRPVDRMVSN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium3000g00002 334 Pfam Pectate lyase 78 240 IPR002022 -
Vium3000g00002 334 SUPERFAMILY Pectin lyase-like 20 282 IPR011050 -
Vium3000g00002 334 PRINTS Pollen allergen Amb family signature 22 39 IPR018082 -
Vium3000g00002 334 PRINTS Pollen allergen Amb family signature 202 221 IPR018082 -
Vium3000g00002 334 PRINTS Pollen allergen Amb family signature 224 243 IPR018082 -
Vium3000g00002 334 PANTHER PECTATE LYASE 18-RELATED 11 286 IPR045032 GO:0030570
Vium3000g00002 334 SMART amb_all 69 247 IPR002022 -
Vium3000g00002 334 Gene3D - 9 316 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium3000g00002 Vium-Chr3000 18069 20983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium3000g00002 44 332 Polysaccharide Lyase AT3G55140 80.277 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium3000g00002 K01728 - gmx:100802068 635.18