Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2g00002 ATGGCTTTTCCAAACCAATCCATGTCATCGGTTTCTCCCGAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTGATAGTCTTTTCAAACCGTGGCCGCCTGTATGAATATGCTAATAACAGTGTCAAAGCTTCAATTGAGAGATACAAGAAAGCAAGTTCAGATTCATCTAATGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGAGTTCAAATCAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGCTTTGAGCGATATGGATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGATCAAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAAAAGAGGGAGACAGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATGGCAGAAAGGGAAAGGAGTGAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGATTACAACCCAATAATAACCAGTATGCTGGACAAGACCACATGTCCCTCCAATTTGTTTGA 729 0.4252 MAFPNQSMSSVSPERKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSNGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQLLRAKMAERERSEHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNNQYAGQDHMSLQFV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2g00002 242 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Vium2g00002 242 Pfam K-box region 100 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2g00002 242 MobiDBLite consensus disorder prediction 1 20 - -
Vium2g00002 242 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Vium2g00002 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 195 - -
Vium2g00002 242 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Vium2g00002 242 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2g00002 242 Coils Coil 140 160 - -
Vium2g00002 242 Coils Coil 103 130 - -
Vium2g00002 242 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Vium2g00002 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Vium2g00002 242 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Vium2g00002 242 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Vium2g00002 242 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Vium2g00002 242 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Vium2g00002 242 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Vium2g00002 242 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2g00002 Vium-Chr2 125 6358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2g00002 15 242 MADS-box Gene Family AT3G58780 64.407 1.42e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2g00002 K-box 3.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2g00002 K09264 - gmx:100776263 410.994