Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2g00001 ATGGCTTTTCCAAACCAATCCATGTCATCGGTTTCTCCCGAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGCTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTGATAGTCTTTTCAAACCGTGGCCGCCTGTATGAATATGCTAATAACAGTGTCAAAGCTTCAATTGAGAGATACAAGAAAGCAAGTTCAGATTCATCTAATGGTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCTGCCAAACTGCGAGTTCAAATCAGCAATCTGCAGAATCACAATAGGCAAATGATGGGTGAGGCTTTGAGCGATATGGATGCCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATTAGCAGAATTCGATCAAAGAAGAATGAGCTGCTATTTGCAGAAATTGAGTACATGCAAAAGAGGATGGCAGAAAGGGAAAGGAGTGAGCATAATGTTAACGTGTTGTCTGGAAGCACAAGCTACGAATCAATGCAATCTCAGTTTGATTCTCGTGGCTTCTTCCAAGTCACTGGATTACAACCCAATAATAACCAGTATGCTGGACAAGACCACATGTCCCTCCAATTTGTTTGA 687 0.425 MAFPNQSMSSVSPERKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDSSNGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSDMDAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRMAERERSEHNVNVLSGSTSYESMQSQFDSRGFFQVTGLQPNNNQYAGQDHMSLQFV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2g00001 228 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Vium2g00001 228 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Vium2g00001 228 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Vium2g00001 228 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Vium2g00001 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Vium2g00001 228 MobiDBLite consensus disorder prediction 1 20 - -
Vium2g00001 228 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Vium2g00001 228 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Vium2g00001 228 Coils Coil 140 160 - -
Vium2g00001 228 Coils Coil 103 130 - -
Vium2g00001 228 SUPERFAMILY SRF-like 18 90 IPR036879 GO:0003677|GO:0046983
Vium2g00001 228 Pfam K-box region 100 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2g00001 228 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Vium2g00001 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 184 - -
Vium2g00001 228 Gene3D - 29 97 IPR036879 GO:0003677|GO:0046983
Vium2g00001 228 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Vium2g00001 228 ProSiteProfiles K-box domain profile. 103 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2g00001 Vium-Chr2 125 6358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2g00001 15 228 MADS-box Gene Family AT3G58780 61.017 3.54e-94 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2g00001 K-box 3.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2g00001 K09264 - gmx:100800107 381.333